Update all python dependenciesjennis/update_python_deps

When running the testsuite, we see a DeprecationWarning for
one of our dependencies, pluginbase and a UserWarning for
/usr/lib64/python3.x/distutils/dist.py:274.

This patch updates all Python dependencies, which as well as
updating things, stops these warnings.

4 files changed, 39 insertions, 29 deletions

diff --git a/requirements/cov-requirements.txt b/requirements/cov-requirements.txt
index a8ba7843b..bf2b5112a 100644
--- a/requirements/cov-requirements.txt
+++ b/requirements/cov-requirements.txt
@@ -1,12 +1,16 @@
 coverage==4.4
-cython==0.29.7
-pytest-cov==2.6.1
+pytest-cov==2.7.1
+Cython==0.29.13
 ## The following requirements were added by pip freeze:
 atomicwrites==1.3.0
-attrs==18.2.0
-more-itertools==6.0.0
-pathlib2==2.3.3
-pluggy==0.9.0
+attrs==19.1.0
+importlib-metadata==0.20
+more-itertools==7.2.0
+packaging==19.1
+pluggy==0.12.0
 py==1.8.0
-pytest==4.3.0
+pyparsing==2.4.2
+pytest==5.1.2
 six==1.12.0
+wcwidth==0.1.7
+zipp==0.6.0
diff --git a/requirements/dev-requirements.txt b/requirements/dev-requirements.txt
index d8039c316..c4930181e 100644
--- a/requirements/dev-requirements.txt
+++ b/requirements/dev-requirements.txt
@@ -1,25 +1,29 @@
-pylint==2.2.2
+pylint==2.3.1
 pycodestyle==2.5.0
-pytest==4.3.0
+pytest==5.1.2
 pytest-datafiles==2.0
 pytest-env==0.6.2
-pytest-xdist==1.26.1
+pytest-xdist==1.29.0
 pytest-timeout==1.3.3
-pyftpdlib==1.5.4
+pyftpdlib==1.5.5
 ## The following requirements were added by pip freeze:
 apipkg==1.5
-astroid==2.1.0
+astroid==2.2.5
 atomicwrites==1.3.0
-attrs==18.2.0
-execnet==1.5.0
-isort==4.3.9
-lazy-object-proxy==1.3.1
+attrs==19.1.0
+execnet==1.7.1
+importlib-metadata==0.20
+isort==4.3.21
+lazy-object-proxy==1.4.2
 mccabe==0.6.1
-more-itertools==6.0.0
-pathlib2==2.3.3
-pluggy==0.9.0
+more-itertools==7.2.0
+packaging==19.1
+pluggy==0.12.0
 py==1.8.0
+pyparsing==2.4.2
 pytest-forked==1.0.2
 six==1.12.0
-typed-ast==1.3.1
-wrapt==1.11.1
+typed-ast==1.4.0
+wcwidth==0.1.7
+wrapt==1.11.2
+zipp==0.6.0
diff --git a/requirements/plugin-requirements.txt b/requirements/plugin-requirements.txt
index ac984746d..950062f73 100644
--- a/requirements/plugin-requirements.txt
+++ b/requirements/plugin-requirements.txt
@@ -1 +1,2 @@
 arpy==1.1.1
+## The following requirements were added by pip freeze:
diff --git a/requirements/requirements.txt b/requirements/requirements.txt
index 370316a68..7d3d5d6c7 100644
--- a/requirements/requirements.txt
+++ b/requirements/requirements.txt
@@ -1,13 +1,14 @@
 Click==7.0
 grpcio==1.23.0
-Jinja2==2.10
-pluginbase==0.7
-protobuf==3.6.1
-psutil==5.4.8
-ruamel.yaml==0.16.0
-setuptools==39.0.1
-pyroaring==0.2.6
+Jinja2==2.10.1
+pluginbase==1.0.0
+protobuf==3.9.1
+psutil==5.6.3
+ruamel.yaml==0.16.5
+setuptools==40.8.0
+pyroaring==0.2.8
 ujson==1.35
 ## The following requirements were added by pip freeze:
-MarkupSafe==1.1.0
+MarkupSafe==1.1.1
+ruamel.yaml.clib==0.1.2
 six==1.12.0