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path: root/src/buildstream/_stream.py
blob: 3c32ff61642d77930350b77c0d9c48990e599bf8 (plain)
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#
#  Copyright (C) 2018 Codethink Limited
#
#  This program is free software; you can redistribute it and/or
#  modify it under the terms of the GNU Lesser General Public
#  License as published by the Free Software Foundation; either
#  version 2 of the License, or (at your option) any later version.
#
#  This library is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.	 See the GNU
#  Lesser General Public License for more details.
#
#  You should have received a copy of the GNU Lesser General Public
#  License along with this library. If not, see <http://www.gnu.org/licenses/>.
#
#  Authors:
#        Tristan Van Berkom <tristan.vanberkom@codethink.co.uk>
#        Jürg Billeter <juerg.billeter@codethink.co.uk>
#        Tristan Maat <tristan.maat@codethink.co.uk>

import itertools
import functools
import os
import sys
import stat
import shlex
import shutil
import tarfile
import tempfile
from contextlib import contextmanager, suppress
from fnmatch import fnmatch

from ._artifactelement import verify_artifact_ref
from ._exceptions import StreamError, ImplError, BstError, ArtifactElementError, ArtifactError
from ._message import Message, MessageType
from ._scheduler import Scheduler, SchedStatus, TrackQueue, FetchQueue, \
    SourcePushQueue, BuildQueue, PullQueue, ArtifactPushQueue
from ._pipeline import Pipeline, PipelineSelection
from ._profile import Topics, PROFILER
from ._state import State
from .types import _KeyStrength
from . import utils, _yaml, _site
from . import Scope, Consistency


# Stream()
#
# This is the main, toplevel calling interface in BuildStream core.
#
# Args:
#    context (Context): The Context object
#    session_start (datetime): The time when the session started
#    session_start_callback (callable): A callback to invoke when the session starts
#    interrupt_callback (callable): A callback to invoke when we get interrupted
#    ticker_callback (callable): Invoked every second while running the scheduler
#
class Stream():

    def __init__(self, context, session_start, *,
                 session_start_callback=None,
                 interrupt_callback=None,
                 ticker_callback=None):

        #
        # Public members
        #
        self.targets = []            # Resolved target elements
        self.session_elements = []   # List of elements being processed this session
        self.total_elements = []     # Total list of elements based on targets
        self.queues = []             # Queue objects

        #
        # Private members
        #
        self._context = context
        self._artifacts = None
        self._sourcecache = None
        self._project = None
        self._pipeline = None
        self._state = State()        # Owned by Stream, used by Core to set state
        self._scheduler = Scheduler(context, session_start, self._state,
                                    interrupt_callback=interrupt_callback,
                                    ticker_callback=ticker_callback)
        self._first_non_track_queue = None
        self._session_start_callback = session_start_callback

    # init()
    #
    # Initialization of Stream that has side-effects that require it to be
    # performed after the Stream is created.
    #
    def init(self):
        self._artifacts = self._context.artifactcache
        self._sourcecache = self._context.sourcecache

    # cleanup()
    #
    # Cleans up application state
    #
    def cleanup(self):
        if self._project:
            self._project.cleanup()

    # set_project()
    #
    # Set the top-level project.
    #
    # Args:
    #    project (Project): The Project object
    #
    def set_project(self, project):
        assert self._project is None
        self._project = project
        self._pipeline = Pipeline(self._context, project, self._artifacts)

    # load_selection()
    #
    # An all purpose method for loading a selection of elements, this
    # is primarily useful for the frontend to implement `bst show`
    # and `bst shell`.
    #
    # Args:
    #    targets (list of str): Targets to pull
    #    selection (PipelineSelection): The selection mode for the specified targets
    #    except_targets (list of str): Specified targets to except from fetching
    #    use_artifact_config (bool): If artifact remote configs should be loaded
    #
    # Returns:
    #    (list of Element): The selected elements
    def load_selection(self, targets, *,
                       selection=PipelineSelection.NONE,
                       except_targets=(),
                       use_artifact_config=False,
                       load_refs=False):
        with PROFILER.profile(Topics.LOAD_SELECTION, "_".join(t.replace(os.sep, "-") for t in targets)):
            target_objects, _ = self._load(targets, (),
                                           selection=selection,
                                           except_targets=except_targets,
                                           use_artifact_config=use_artifact_config,
                                           load_refs=load_refs)

            return target_objects

    # shell()
    #
    # Run a shell
    #
    # Args:
    #    element (Element): An Element object to run the shell for
    #    scope (Scope): The scope for the shell (Scope.BUILD or Scope.RUN)
    #    prompt (str): The prompt to display in the shell
    #    directory (str): A directory where an existing prestaged sysroot is expected, or None
    #    mounts (list of HostMount): Additional directories to mount into the sandbox
    #    isolate (bool): Whether to isolate the environment like we do in builds
    #    command (list): An argv to launch in the sandbox, or None
    #    usebuildtree (str): Whether to use a buildtree as the source, given cli option
    #    pull_dependencies ([Element]|None): Elements to attempt to pull
    #
    # Returns:
    #    (int): The exit code of the launched shell
    #
    def shell(self, element, scope, prompt, *,
              directory=None,
              mounts=None,
              isolate=False,
              command=None,
              usebuildtree=None,
              pull_dependencies=None):

        # Assert we have everything we need built, unless the directory is specified
        # in which case we just blindly trust the directory, using the element
        # definitions to control the execution environment only.
        if directory is None:
            missing_deps = [
                dep for dep in self._pipeline.dependencies([element], scope)
                if not dep._cached()
            ]
            if missing_deps:
                if not pull_dependencies:
                    raise StreamError(
                        "Elements need to be built or downloaded before staging a shell environment",
                        detail="\n"
                        .join(list(map(lambda x: x._get_full_name(), missing_deps))))
                self._message(MessageType.INFO, "Attempting to fetch missing or incomplete artifacts")
                self._scheduler.clear_queues()
                self._add_queue(PullQueue(self._scheduler))
                plan = self._pipeline.add_elements([element], missing_deps)
                self._enqueue_plan(plan)
                self._run()

        buildtree = False
        # Check if we require a pull queue attempt, with given artifact state and context
        if usebuildtree:
            if not element._cached_buildtree():
                require_buildtree = self._buildtree_pull_required([element])
                # Attempt a pull queue for the given element if remote and context allow it
                if require_buildtree:
                    self._message(MessageType.INFO, "Attempting to fetch missing artifact buildtree")
                    self._scheduler.clear_queues()
                    self._add_queue(PullQueue(self._scheduler))
                    self._enqueue_plan(require_buildtree)
                    self._run()
                    # Now check if the buildtree was successfully fetched
                    if element._cached_buildtree():
                        buildtree = True

                if not buildtree:
                    message = "Buildtree is not cached locally or in available remotes"
                    if usebuildtree == "always":
                        raise StreamError(message)
                    else:
                        self._message(MessageType.INFO, message + ", shell will be loaded without it")
            else:
                buildtree = True

        return element._shell(scope, directory, mounts=mounts, isolate=isolate, prompt=prompt, command=command,
                              usebuildtree=buildtree)

    # build()
    #
    # Builds (assembles) elements in the pipeline.
    #
    # Args:
    #    targets (list of str): Targets to build
    #    track_targets (list of str): Specified targets for tracking
    #    track_except (list of str): Specified targets to except from tracking
    #    track_cross_junctions (bool): Whether tracking should cross junction boundaries
    #    ignore_junction_targets (bool): Whether junction targets should be filtered out
    #    build_all (bool): Whether to build all elements, or only those
    #                      which are required to build the target.
    #    remote (str): The URL of a specific remote server to push to, or None
    #
    # If `remote` specified as None, then regular configuration will be used
    # to determine where to push artifacts to.
    #
    def build(self, targets, *,
              track_targets=None,
              track_except=None,
              track_cross_junctions=False,
              ignore_junction_targets=False,
              build_all=False,
              remote=None):

        if build_all:
            selection = PipelineSelection.ALL
        else:
            selection = PipelineSelection.PLAN

        use_config = True
        if remote:
            use_config = False

        elements, track_elements = \
            self._load(targets, track_targets,
                       selection=selection, track_selection=PipelineSelection.ALL,
                       track_except_targets=track_except,
                       track_cross_junctions=track_cross_junctions,
                       ignore_junction_targets=ignore_junction_targets,
                       use_artifact_config=use_config,
                       artifact_remote_url=remote,
                       use_source_config=True,
                       dynamic_plan=True)

        # Remove the tracking elements from the main targets
        elements = self._pipeline.subtract_elements(elements, track_elements)

        # Assert that the elements we're not going to track are consistent
        self._pipeline.assert_consistent(elements)

        if all(project.remote_execution_specs for project in self._context.get_projects()):
            # Remote execution is configured for all projects.
            # Require artifact files only for target elements and their runtime dependencies.
            self._context.set_artifact_files_optional()

            # fetch blobs of targets if options set
            if self._context.pull_artifact_files:
                scope = Scope.ALL if build_all else Scope.RUN
                for element in self.targets:
                    element._set_artifact_files_required(scope=scope)

        # Now construct the queues
        #
        self._scheduler.clear_queues()
        track_queue = None
        if track_elements:
            track_queue = TrackQueue(self._scheduler)
            self._add_queue(track_queue, track=True)

        if self._artifacts.has_fetch_remotes():
            self._add_queue(PullQueue(self._scheduler))

        self._add_queue(FetchQueue(self._scheduler, skip_cached=True))

        self._add_queue(BuildQueue(self._scheduler))

        if self._artifacts.has_push_remotes():
            self._add_queue(ArtifactPushQueue(self._scheduler))

        if self._sourcecache.has_push_remotes():
            self._add_queue(SourcePushQueue(self._scheduler))

        # Enqueue elements
        #
        if track_elements:
            self._enqueue_plan(track_elements, queue=track_queue)
        self._enqueue_plan(elements)
        self._run()

    # fetch()
    #
    # Fetches sources on the pipeline.
    #
    # Args:
    #    targets (list of str): Targets to fetch
    #    selection (PipelineSelection): The selection mode for the specified targets
    #    except_targets (list of str): Specified targets to except from fetching
    #    track_targets (bool): Whether to track selected targets in addition to fetching
    #    track_cross_junctions (bool): Whether tracking should cross junction boundaries
    #    remote (str|None): The URL of a specific remote server to pull from.
    #
    def fetch(self, targets, *,
              selection=PipelineSelection.PLAN,
              except_targets=None,
              track_targets=False,
              track_cross_junctions=False,
              remote=None):

        if track_targets:
            track_targets = targets
            track_selection = selection
            track_except_targets = except_targets
        else:
            track_targets = ()
            track_selection = PipelineSelection.NONE
            track_except_targets = ()

        use_source_config = True
        if remote:
            use_source_config = False

        elements, track_elements = \
            self._load(targets, track_targets,
                       selection=selection, track_selection=track_selection,
                       except_targets=except_targets,
                       track_except_targets=track_except_targets,
                       track_cross_junctions=track_cross_junctions,
                       use_source_config=use_source_config,
                       source_remote_url=remote)

        # Delegated to a shared fetch method
        self._fetch(elements, track_elements=track_elements)

    # track()
    #
    # Tracks all the sources of the selected elements.
    #
    # Args:
    #    targets (list of str): Targets to track
    #    selection (PipelineSelection): The selection mode for the specified targets
    #    except_targets (list of str): Specified targets to except from tracking
    #    cross_junctions (bool): Whether tracking should cross junction boundaries
    #
    # If no error is encountered while tracking, then the project files
    # are rewritten inline.
    #
    def track(self, targets, *,
              selection=PipelineSelection.REDIRECT,
              except_targets=None,
              cross_junctions=False):

        # We pass no target to build. Only to track. Passing build targets
        # would fully load project configuration which might not be
        # possible before tracking is done.
        _, elements = \
            self._load([], targets,
                       selection=selection, track_selection=selection,
                       except_targets=except_targets,
                       track_except_targets=except_targets,
                       track_cross_junctions=cross_junctions)

        self._scheduler.clear_queues()
        track_queue = TrackQueue(self._scheduler)
        self._add_queue(track_queue, track=True)
        self._enqueue_plan(elements, queue=track_queue)
        self._run()

    # pull()
    #
    # Pulls artifacts from remote artifact server(s)
    #
    # Args:
    #    targets (list of str): Targets to pull
    #    selection (PipelineSelection): The selection mode for the specified targets
    #    ignore_junction_targets (bool): Whether junction targets should be filtered out
    #    remote (str): The URL of a specific remote server to pull from, or None
    #
    # If `remote` specified as None, then regular configuration will be used
    # to determine where to pull artifacts from.
    #
    def pull(self, targets, *,
             selection=PipelineSelection.NONE,
             ignore_junction_targets=False,
             remote=None):

        use_config = True
        if remote:
            use_config = False

        elements, _ = self._load(targets, (),
                                 selection=selection,
                                 ignore_junction_targets=ignore_junction_targets,
                                 use_artifact_config=use_config,
                                 artifact_remote_url=remote)

        if not self._artifacts.has_fetch_remotes():
            raise StreamError("No artifact caches available for pulling artifacts")

        self._pipeline.assert_consistent(elements)
        self._scheduler.clear_queues()
        self._add_queue(PullQueue(self._scheduler))
        self._enqueue_plan(elements)
        self._run()

    # push()
    #
    # Pulls artifacts to remote artifact server(s)
    #
    # Args:
    #    targets (list of str): Targets to push
    #    selection (PipelineSelection): The selection mode for the specified targets
    #    ignore_junction_targets (bool): Whether junction targets should be filtered out
    #    remote (str): The URL of a specific remote server to push to, or None
    #
    # If `remote` specified as None, then regular configuration will be used
    # to determine where to push artifacts to.
    #
    # If any of the given targets are missing their expected buildtree artifact,
    # a pull queue will be created if user context and available remotes allow for
    # attempting to fetch them.
    #
    def push(self, targets, *,
             selection=PipelineSelection.NONE,
             ignore_junction_targets=False,
             remote=None):

        use_config = True
        if remote:
            use_config = False

        elements, _ = self._load(targets, (),
                                 selection=selection,
                                 ignore_junction_targets=ignore_junction_targets,
                                 use_artifact_config=use_config,
                                 artifact_remote_url=remote)

        if not self._artifacts.has_push_remotes():
            raise StreamError("No artifact caches available for pushing artifacts")

        self._pipeline.assert_consistent(elements)

        # Check if we require a pull queue, with given artifact state and context
        require_buildtrees = self._buildtree_pull_required(elements)
        if require_buildtrees:
            self._message(MessageType.INFO, "Attempting to fetch missing artifact buildtrees")
            self._add_queue(PullQueue(self._scheduler))
            self._enqueue_plan(require_buildtrees)
        else:
            # FIXME: This hack should be removed as a result of refactoring
            #        Element._update_state()
            #
            # This workaround marks all dependencies of all selected elements as
            # "pulled" before trying to push.
            #
            # Instead of lying to the elements and telling them they have already
            # been pulled, we should have something more consistent with how other
            # state bits are handled; and explicitly tell the elements that they
            # need to be pulled with something like Element._schedule_pull().
            #
            for element in elements:
                element._pull_done()

        self._scheduler.clear_queues()
        push_queue = ArtifactPushQueue(self._scheduler)
        self._add_queue(push_queue)
        self._enqueue_plan(elements, queue=push_queue)
        self._run()

    # checkout()
    #
    # Checkout target artifact to the specified location
    #
    # Args:
    #    target (str): Target to checkout
    #    location (str): Location to checkout the artifact to
    #    force (bool): Whether files can be overwritten if necessary
    #    scope (str): The scope of dependencies to checkout
    #    integrate (bool): Whether to run integration commands
    #    hardlinks (bool): Whether checking out files hardlinked to
    #                      their artifacts is acceptable
    #    tar (bool): If true, a tarball from the artifact contents will
    #                be created, otherwise the file tree of the artifact
    #                will be placed at the given location. If true and
    #                location is '-', the tarball will be dumped on the
    #                standard output.
    #    pull (bool): If true will attempt to pull any missing or incomplete
    #                 artifacts.
    #
    def checkout(self, target, *,
                 location=None,
                 force=False,
                 scope=Scope.RUN,
                 integrate=True,
                 hardlinks=False,
                 tar=False,
                 pull=False):

        # if pulling we need to ensure dependency artifacts are also pulled
        selection = PipelineSelection.RUN if pull else PipelineSelection.NONE
        elements, _ = self._load((target,), (), selection=selection, use_artifact_config=True)

        target = elements[-1]

        self._check_location_writable(location, force=force, tar=tar)

        uncached_elts = [elt for elt in elements if not elt._cached()]
        if uncached_elts and pull:
            self._message(MessageType.INFO, "Attempting to fetch missing or incomplete artifact")
            self._scheduler.clear_queues()
            self._add_queue(PullQueue(self._scheduler))
            self._enqueue_plan(uncached_elts)
            self._run()

        # Stage deps into a temporary sandbox first
        try:
            with target._prepare_sandbox(scope=scope, directory=None,
                                         integrate=integrate) as sandbox:

                # Copy or move the sandbox to the target directory
                sandbox_vroot = sandbox.get_virtual_directory()

                if not tar:
                    with target.timed_activity("Checking out files in '{}'"
                                               .format(location)):
                        try:
                            if hardlinks:
                                self._checkout_hardlinks(sandbox_vroot, location)
                            else:
                                sandbox_vroot.export_files(location)
                        except OSError as e:
                            raise StreamError("Failed to checkout files: '{}'"
                                              .format(e)) from e
                else:
                    if location == '-':
                        with target.timed_activity("Creating tarball"):
                            # Save the stdout FD to restore later
                            saved_fd = os.dup(sys.stdout.fileno())
                            try:
                                with os.fdopen(sys.stdout.fileno(), 'wb') as fo:
                                    with tarfile.open(fileobj=fo, mode="w|") as tf:
                                        sandbox_vroot.export_to_tar(tf, '.')
                            finally:
                                # No matter what, restore stdout for further use
                                os.dup2(saved_fd, sys.stdout.fileno())
                                os.close(saved_fd)
                    else:
                        with target.timed_activity("Creating tarball '{}'"
                                                   .format(location)):
                            with tarfile.open(location, "w:") as tf:
                                sandbox_vroot.export_to_tar(tf, '.')

        except BstError as e:
            raise StreamError("Error while staging dependencies into a sandbox"
                              ": '{}'".format(e), detail=e.detail, reason=e.reason) from e

    # artifact_log()
    #
    # Show the full log of an artifact
    #
    # Args:
    #    targets (str): Targets to view the logs of
    #
    # Returns:
    #    logsdir (list): A list of CasBasedDirectory objects containing artifact logs
    #
    def artifact_log(self, targets):
        # Return list of Element and/or ArtifactElement objects
        target_objects = self.load_selection(targets, selection=PipelineSelection.NONE, load_refs=True)

        logsdirs = []
        for obj in target_objects:
            ref = obj.get_artifact_name()
            if not obj._cached():
                self._message(MessageType.WARN, "{} is not cached".format(ref))
                continue
            elif not obj._cached_logs():
                self._message(MessageType.WARN, "{} is cached without log files".format(ref))
                continue

            logsdirs.append(self._artifacts.get_artifact_logs(ref))

        return logsdirs

    # artifact_delete()
    #
    # Remove artifacts from the local cache
    #
    # Args:
    #    targets (str): Targets to remove
    #    no_prune (bool): Whether to prune the unreachable refs, default False
    #
    def artifact_delete(self, targets, no_prune):
        # Return list of Element and/or ArtifactElement objects
        target_objects = self.load_selection(targets, selection=PipelineSelection.NONE, load_refs=True)

        # Some of the targets may refer to the same key, so first obtain a
        # set of the refs to be removed.
        remove_refs = set()
        for obj in target_objects:
            for key_strength in [_KeyStrength.STRONG, _KeyStrength.WEAK]:
                key = obj._get_cache_key(strength=key_strength)
                remove_refs.add(obj.get_artifact_name(key=key))

        ref_removed = False
        for ref in remove_refs:
            try:
                self._artifacts.remove(ref, defer_prune=True)
            except ArtifactError as e:
                self._message(MessageType.WARN, str(e))
                continue

            self._message(MessageType.INFO, "Removed: {}".format(ref))
            ref_removed = True

        # Prune the artifact cache
        if ref_removed and not no_prune:
            with self._context.messenger.timed_activity("Pruning artifact cache"):
                self._artifacts.prune()

        if not ref_removed:
            self._message(MessageType.INFO, "No artifacts were removed")

    # source_checkout()
    #
    # Checkout sources of the target element to the specified location
    #
    # Args:
    #    target (str): The target element whose sources to checkout
    #    location (str): Location to checkout the sources to
    #    deps (str): The dependencies to checkout
    #    except_targets (list): List of targets to except from staging
    #
    def source_checkout(self, target, *,
                        location=None,
                        force=False,
                        deps='none',
                        except_targets=(),
                        tar=False,
                        include_build_scripts=False):

        self._check_location_writable(location, force=force, tar=tar)

        elements, _ = self._load((target,), (),
                                 selection=deps,
                                 except_targets=except_targets)

        # Assert all sources are cached in the source dir
        self._fetch(elements)
        self._pipeline.assert_sources_cached(elements)

        # Stage all sources determined by scope
        try:
            self._source_checkout(elements, location, force, deps,
                                  tar, include_build_scripts)
        except BstError as e:
            raise StreamError("Error while writing sources"
                              ": '{}'".format(e), detail=e.detail, reason=e.reason) from e

    # workspace_open
    #
    # Open a project workspace
    #
    # Args:
    #    targets (list): List of target elements to open workspaces for
    #    no_checkout (bool): Whether to skip checking out the source
    #    track_first (bool): Whether to track and fetch first
    #    force (bool): Whether to ignore contents in an existing directory
    #    custom_dir (str): Custom location to create a workspace or false to use default location.
    #
    def workspace_open(self, targets, *,
                       no_checkout,
                       track_first,
                       force,
                       custom_dir):
        # This function is a little funny but it is trying to be as atomic as possible.

        if track_first:
            track_targets = targets
        else:
            track_targets = ()

        elements, track_elements = self._load(targets, track_targets,
                                              selection=PipelineSelection.REDIRECT,
                                              track_selection=PipelineSelection.REDIRECT)

        workspaces = self._context.get_workspaces()

        # If we're going to checkout, we need at least a fetch,
        # if we were asked to track first, we're going to fetch anyway.
        #
        if not no_checkout or track_first:
            track_elements = []
            if track_first:
                track_elements = elements
            self._fetch(elements, track_elements=track_elements, fetch_original=True)

        expanded_directories = []
        #  To try to be more atomic, loop through the elements and raise any errors we can early
        for target in elements:

            if not list(target.sources()):
                build_depends = [x.name for x in target.dependencies(Scope.BUILD, recurse=False)]
                if not build_depends:
                    raise StreamError("The element {}  has no sources".format(target.name))
                detail = "Try opening a workspace on one of its dependencies instead:\n"
                detail += "  \n".join(build_depends)
                raise StreamError("The element {} has no sources".format(target.name), detail=detail)

            # Check for workspace config
            workspace = workspaces.get_workspace(target._get_full_name())
            if workspace and not force:
                raise StreamError("Element '{}' already has workspace defined at: {}"
                                  .format(target.name, workspace.get_absolute_path()))

            target_consistency = target._get_consistency()
            if not no_checkout and target_consistency < Consistency.CACHED and \
                    target_consistency._source_cached():
                raise StreamError("Could not stage uncached source. For {} ".format(target.name) +
                                  "Use `--track` to track and " +
                                  "fetch the latest version of the " +
                                  "source.")

            if not custom_dir:
                directory = os.path.abspath(os.path.join(self._context.workspacedir, target.name))
                if directory[-4:] == '.bst':
                    directory = directory[:-4]
                expanded_directories.append(directory)

        if custom_dir:
            if len(elements) != 1:
                raise StreamError("Exactly one element can be given if --directory is used",
                                  reason='directory-with-multiple-elements')
            directory = os.path.abspath(custom_dir)
            expanded_directories = [directory, ]
        else:
            # If this fails it is a bug in what ever calls this, usually cli.py and so can not be tested for via the
            # run bst test mechanism.
            assert len(elements) == len(expanded_directories)

        for target, directory in zip(elements, expanded_directories):
            if os.path.exists(directory):
                if not os.path.isdir(directory):
                    raise StreamError("For element '{}', Directory path is not a directory: {}"
                                      .format(target.name, directory), reason='bad-directory')

                if not (no_checkout or force) and os.listdir(directory):
                    raise StreamError("For element '{}', Directory path is not empty: {}"
                                      .format(target.name, directory), reason='bad-directory')

        # So far this function has tried to catch as many issues as possible with out making any changes
        # Now it dose the bits that can not be made atomic.
        targetGenerator = zip(elements, expanded_directories)
        for target, directory in targetGenerator:
            self._message(MessageType.INFO, "Creating workspace for element {}"
                          .format(target.name))

            workspace = workspaces.get_workspace(target._get_full_name())
            if workspace:
                workspaces.delete_workspace(target._get_full_name())
                workspaces.save_config()
                shutil.rmtree(directory)
            try:
                os.makedirs(directory, exist_ok=True)
            except OSError as e:
                todo_elements = " ".join([str(target.name) for target, directory_dict in targetGenerator])
                if todo_elements:
                    # This output should make creating the remaining workspaces as easy as possible.
                    todo_elements = "\nDid not try to create workspaces for " + todo_elements
                raise StreamError("Failed to create workspace directory: {}".format(e) + todo_elements) from e

            workspaces.create_workspace(target, directory, checkout=not no_checkout)
            self._message(MessageType.INFO, "Created a workspace for element: {}"
                          .format(target._get_full_name()))

    # workspace_close
    #
    # Close a project workspace
    #
    # Args:
    #    element_name (str): The element name to close the workspace for
    #    remove_dir (bool): Whether to remove the associated directory
    #
    def workspace_close(self, element_name, *, remove_dir):
        workspaces = self._context.get_workspaces()
        workspace = workspaces.get_workspace(element_name)

        # Remove workspace directory if prompted
        if remove_dir:
            with self._context.messenger.timed_activity("Removing workspace directory {}"
                                                        .format(workspace.get_absolute_path())):
                try:
                    shutil.rmtree(workspace.get_absolute_path())
                except OSError as e:
                    raise StreamError("Could not remove  '{}': {}"
                                      .format(workspace.get_absolute_path(), e)) from e

        # Delete the workspace and save the configuration
        workspaces.delete_workspace(element_name)
        workspaces.save_config()
        self._message(MessageType.INFO, "Closed workspace for {}".format(element_name))

    # workspace_reset
    #
    # Reset a workspace to its original state, discarding any user
    # changes.
    #
    # Args:
    #    targets (list of str): The target elements to reset the workspace for
    #    soft (bool): Only reset workspace state
    #    track_first (bool): Whether to also track the sources first
    #
    def workspace_reset(self, targets, *, soft, track_first):

        if track_first:
            track_targets = targets
        else:
            track_targets = ()

        elements, track_elements = self._load(targets, track_targets,
                                              selection=PipelineSelection.REDIRECT,
                                              track_selection=PipelineSelection.REDIRECT)

        nonexisting = []
        for element in elements:
            if not self.workspace_exists(element.name):
                nonexisting.append(element.name)
        if nonexisting:
            raise StreamError("Workspace does not exist", detail="\n".join(nonexisting))

        # Do the tracking first
        if track_first:
            self._fetch(elements, track_elements=track_elements, fetch_original=True)

        workspaces = self._context.get_workspaces()

        for element in elements:
            workspace = workspaces.get_workspace(element._get_full_name())
            workspace_path = workspace.get_absolute_path()
            if soft:
                workspace.prepared = False
                self._message(MessageType.INFO, "Reset workspace state for {} at: {}"
                              .format(element.name, workspace_path))
                continue

            with element.timed_activity("Removing workspace directory {}"
                                        .format(workspace_path)):
                try:
                    shutil.rmtree(workspace_path)
                except OSError as e:
                    raise StreamError("Could not remove  '{}': {}"
                                      .format(workspace_path, e)) from e

            workspaces.delete_workspace(element._get_full_name())
            workspaces.create_workspace(element, workspace_path, checkout=True)

            self._message(MessageType.INFO,
                          "Reset workspace for {} at: {}".format(element.name,
                                                                 workspace_path))

        workspaces.save_config()

    # workspace_exists
    #
    # Check if a workspace exists
    #
    # Args:
    #    element_name (str): The element name to close the workspace for, or None
    #
    # Returns:
    #    (bool): True if the workspace exists
    #
    # If None is specified for `element_name`, then this will return
    # True if there are any existing workspaces.
    #
    def workspace_exists(self, element_name=None):
        workspaces = self._context.get_workspaces()
        if element_name:
            workspace = workspaces.get_workspace(element_name)
            if workspace:
                return True
        elif any(workspaces.list()):
            return True

        return False

    # workspace_is_required()
    #
    # Checks whether the workspace belonging to element_name is required to
    # load the project
    #
    # Args:
    #    element_name (str): The element whose workspace may be required
    #
    # Returns:
    #    (bool): True if the workspace is required
    def workspace_is_required(self, element_name):
        invoked_elm = self._project.invoked_from_workspace_element()
        return invoked_elm == element_name

    # workspace_list
    #
    # Serializes the workspaces and dumps them in YAML to stdout.
    #
    def workspace_list(self):
        workspaces = []
        for element_name, workspace_ in self._context.get_workspaces().list():
            workspace_detail = {
                'element': element_name,
                'directory': workspace_.get_absolute_path(),
            }
            workspaces.append(workspace_detail)

        _yaml.roundtrip_dump({
            'workspaces': workspaces
        })

    # redirect_element_names()
    #
    # Takes a list of element names and returns a list where elements have been
    # redirected to their source elements if the element file exists, and just
    # the name, if not.
    #
    # Args:
    #    elements (list of str): The element names to redirect
    #
    # Returns:
    #    (list of str): The element names after redirecting
    #
    def redirect_element_names(self, elements):
        element_dir = self._project.element_path
        load_elements = []
        output_elements = set()

        for e in elements:
            element_path = os.path.join(element_dir, e)
            if os.path.exists(element_path):
                load_elements.append(e)
            else:
                output_elements.add(e)
        if load_elements:
            loaded_elements, _ = self._load(load_elements, (),
                                            selection=PipelineSelection.REDIRECT,
                                            track_selection=PipelineSelection.REDIRECT)

            for e in loaded_elements:
                output_elements.add(e.name)

        return list(output_elements)

    # fetch_subprojects()
    #
    # Fetch subprojects as part of the project and element loading process.
    #
    # Args:
    #    junctions (list of Element): The junctions to fetch
    #
    def fetch_subprojects(self, junctions):
        self._scheduler.clear_queues()
        queue = FetchQueue(self._scheduler)
        queue.enqueue(junctions)
        self.queues = [queue]
        self._run()

    # get_state()
    #
    # Get the State object owned by Stream
    #
    # Returns:
    #    State: The State object
    def get_state(self):
        return self._state

    #############################################################
    #                 Scheduler API forwarding                  #
    #############################################################

    # running
    #
    # Whether the scheduler is running
    #
    @property
    def running(self):
        return self._scheduler.loop is not None

    # suspended
    #
    # Whether the scheduler is currently suspended
    #
    @property
    def suspended(self):
        return self._scheduler.suspended

    # terminated
    #
    # Whether the scheduler is currently terminated
    #
    @property
    def terminated(self):
        return self._scheduler.terminated

    # elapsed_time
    #
    # Elapsed time since the session start
    #
    @property
    def elapsed_time(self):
        return self._scheduler.elapsed_time()

    # terminate()
    #
    # Terminate jobs
    #
    def terminate(self):
        self._scheduler.terminate_jobs()

    # quit()
    #
    # Quit the session, this will continue with any ongoing
    # jobs, use Stream.terminate() instead for cancellation
    # of ongoing jobs
    #
    def quit(self):
        self._scheduler.stop_queueing()

    # suspend()
    #
    # Context manager to suspend ongoing jobs
    #
    @contextmanager
    def suspend(self):
        with self._scheduler.jobs_suspended():
            yield

    #############################################################
    #                    Private Methods                        #
    #############################################################

    # _load()
    #
    # A convenience method for loading element lists
    #
    # If `targets` is not empty used project configuration will be
    # fully loaded. If `targets` is empty, tracking will still be
    # resolved for elements in `track_targets`, but no build pipeline
    # will be resolved. This is behavior is import for track() to
    # not trigger full loading of project configuration.
    #
    # Args:
    #    targets (list of str): Main targets to load
    #    track_targets (list of str): Tracking targets
    #    selection (PipelineSelection): The selection mode for the specified targets
    #    track_selection (PipelineSelection): The selection mode for the specified tracking targets
    #    except_targets (list of str): Specified targets to except from fetching
    #    track_except_targets (list of str): Specified targets to except from fetching
    #    track_cross_junctions (bool): Whether tracking should cross junction boundaries
    #    ignore_junction_targets (bool): Whether junction targets should be filtered out
    #    use_artifact_config (bool): Whether to initialize artifacts with the config
    #    use_source_config (bool): Whether to initialize remote source caches with the config
    #    artifact_remote_url (str): A remote url for initializing the artifacts
    #    source_remote_url (str): A remote url for initializing source caches
    #
    # Returns:
    #    (list of Element): The primary element selection
    #    (list of Element): The tracking element selection
    #
    def _load(self, targets, track_targets, *,
              selection=PipelineSelection.NONE,
              track_selection=PipelineSelection.NONE,
              except_targets=(),
              track_except_targets=(),
              track_cross_junctions=False,
              ignore_junction_targets=False,
              use_artifact_config=False,
              use_source_config=False,
              artifact_remote_url=None,
              source_remote_url=None,
              dynamic_plan=False,
              load_refs=False):

        # Classify element and artifact strings
        target_elements, target_artifacts = self._classify_artifacts(targets)

        if target_artifacts and not load_refs:
            detail = '\n'.join(target_artifacts)
            raise ArtifactElementError("Cannot perform this operation with artifact refs:", detail=detail)

        # Load rewritable if we have any tracking selection to make
        rewritable = False
        if track_targets:
            rewritable = True

        # Load all target elements
        elements, except_elements, track_elements, track_except_elements = \
            self._pipeline.load([target_elements, except_targets, track_targets, track_except_targets],
                                rewritable=rewritable)

        # Obtain the ArtifactElement objects
        artifacts = [self._project.create_artifact_element(ref) for ref in target_artifacts]

        # Optionally filter out junction elements
        if ignore_junction_targets:
            elements = [e for e in elements if e.get_kind() != 'junction']

        # Hold on to the targets
        self.targets = elements + artifacts

        # Here we should raise an error if the track_elements targets
        # are not dependencies of the primary targets, this is not
        # supported.
        #
        # This can happen with `bst build --track`
        #
        if targets and not self._pipeline.targets_include(elements, track_elements):
            raise StreamError("Specified tracking targets that are not "
                              "within the scope of primary targets")

        # First take care of marking tracking elements, this must be
        # done before resolving element states.
        #
        assert track_selection != PipelineSelection.PLAN

        # Tracked elements are split by owner projects in order to
        # filter cross junctions tracking dependencies on their
        # respective project.
        track_projects = {}
        for element in track_elements:
            project = element._get_project()
            if project not in track_projects:
                track_projects[project] = [element]
            else:
                track_projects[project].append(element)

        track_selected = []

        for project, project_elements in track_projects.items():
            selected = self._pipeline.get_selection(project_elements, track_selection)
            selected = self._pipeline.track_cross_junction_filter(project,
                                                                  selected,
                                                                  track_cross_junctions)
            track_selected.extend(selected)

        track_selected = self._pipeline.except_elements(track_elements,
                                                        track_selected,
                                                        track_except_elements)

        for element in track_selected:
            element._schedule_tracking()

        if not targets:
            self._pipeline.resolve_elements(track_selected)
            return [], track_selected

        # ArtifactCache.setup_remotes expects all projects to be fully loaded
        for project in self._context.get_projects():
            project.ensure_fully_loaded()

        # Connect to remote caches, this needs to be done before resolving element state
        self._artifacts.setup_remotes(use_config=use_artifact_config, remote_url=artifact_remote_url)
        self._sourcecache.setup_remotes(use_config=use_source_config, remote_url=source_remote_url)

        # Now move on to loading primary selection.
        #
        self._pipeline.resolve_elements(self.targets)
        selected = self._pipeline.get_selection(self.targets, selection, silent=False)
        selected = self._pipeline.except_elements(self.targets,
                                                  selected,
                                                  except_elements)

        # Set the "required" artifacts that should not be removed
        # while this pipeline is active
        #
        # It must include all the artifacts which are required by the
        # final product. Note that this is a superset of the build plan.
        #
        # use partial as we send this to both Artifact and Source caches
        required_elements = functools.partial(self._pipeline.dependencies, elements, Scope.ALL)
        self._artifacts.mark_required_elements(required_elements())

        self._sourcecache.mark_required_sources(
            itertools.chain.from_iterable(
                [element.sources() for element in required_elements()]))

        if selection == PipelineSelection.PLAN and dynamic_plan:
            # We use a dynamic build plan, only request artifacts of top-level targets,
            # others are requested dynamically as needed.
            # This avoids pulling, fetching, or building unneeded build-only dependencies.
            for element in elements:
                element._set_required()
        else:
            for element in selected:
                element._set_required()

        return selected, track_selected

    # _message()
    #
    # Local message propagator
    #
    def _message(self, message_type, message, **kwargs):
        args = dict(kwargs)
        self._context.messenger.message(
            Message(None, message_type, message, **args))

    # _add_queue()
    #
    # Adds a queue to the stream
    #
    # Args:
    #    queue (Queue): Queue to add to the pipeline
    #    track (bool): Whether this is the tracking queue
    #
    def _add_queue(self, queue, *, track=False):
        self.queues.append(queue)
        if not (track or self._first_non_track_queue):
            self._first_non_track_queue = queue
            self._first_non_track_queue.set_required_element_check()

    # _enqueue_plan()
    #
    # Enqueues planned elements to the specified queue.
    #
    # Args:
    #    plan (list of Element): The list of elements to be enqueued
    #    queue (Queue): The target queue, defaults to the first non-track queue
    #
    def _enqueue_plan(self, plan, *, queue=None):
        queue = queue or self._first_non_track_queue

        queue.enqueue(plan)
        self.session_elements += plan

    # _run()
    #
    # Common function for running the scheduler
    #
    def _run(self):

        # Inform the frontend of the full list of elements
        # and the list of elements which will be processed in this run
        #
        self.total_elements = list(self._pipeline.dependencies(self.targets, Scope.ALL))

        if self._session_start_callback is not None:
            self._session_start_callback()

        status = self._scheduler.run(self.queues)

        if status == SchedStatus.ERROR:
            raise StreamError()
        elif status == SchedStatus.TERMINATED:
            raise StreamError(terminated=True)

    # _fetch()
    #
    # Performs the fetch job, the body of this function is here because
    # it is shared between a few internals.
    #
    # Args:
    #    elements (list of Element): Elements to fetch
    #    track_elements (list of Element): Elements to track
    #    fetch_original (Bool): Whether to fetch original unstaged
    #
    def _fetch(self, elements, *, track_elements=None, fetch_original=False):

        if track_elements is None:
            track_elements = []

        # Subtract the track elements from the fetch elements, they will be added separately
        fetch_plan = self._pipeline.subtract_elements(elements, track_elements)

        # Assert consistency for the fetch elements
        self._pipeline.assert_consistent(fetch_plan)

        # Filter out elements with cached sources, only from the fetch plan
        # let the track plan resolve new refs.
        cached = [elt for elt in fetch_plan
                  if not elt._should_fetch(fetch_original)]
        fetch_plan = self._pipeline.subtract_elements(fetch_plan, cached)

        # Construct queues, enqueue and run
        #
        self._scheduler.clear_queues()
        track_queue = None
        if track_elements:
            track_queue = TrackQueue(self._scheduler)
            self._add_queue(track_queue, track=True)
        self._add_queue(FetchQueue(self._scheduler, fetch_original=fetch_original))

        if track_elements:
            self._enqueue_plan(track_elements, queue=track_queue)

        self._enqueue_plan(fetch_plan)
        self._run()

    # _check_location_writable()
    #
    # Check if given location is writable.
    #
    # Args:
    #    location (str): Destination path
    #    force (bool): Allow files to be overwritten
    #    tar (bool): Whether destination is a tarball
    #
    # Raises:
    #    (StreamError): If the destination is not writable
    #
    def _check_location_writable(self, location, force=False, tar=False):
        if not tar:
            try:
                os.makedirs(location, exist_ok=True)
            except OSError as e:
                raise StreamError("Failed to create destination directory: '{}'"
                                  .format(e)) from e
            if not os.access(location, os.W_OK):
                raise StreamError("Destination directory '{}' not writable"
                                  .format(location))
            if not force and os.listdir(location):
                raise StreamError("Destination directory '{}' not empty"
                                  .format(location))
        elif os.path.exists(location) and location != '-':
            if not os.access(location, os.W_OK):
                raise StreamError("Output file '{}' not writable"
                                  .format(location))
            if not force and os.path.exists(location):
                raise StreamError("Output file '{}' already exists"
                                  .format(location))

    # Helper function for checkout()
    #
    def _checkout_hardlinks(self, sandbox_vroot, directory):
        try:
            utils.safe_remove(directory)
        except OSError as e:
            raise StreamError("Failed to remove checkout directory: {}".format(e)) from e

        sandbox_vroot.export_files(directory, can_link=True, can_destroy=True)

    # Helper function for source_checkout()
    def _source_checkout(self, elements,
                         location=None,
                         force=False,
                         deps='none',
                         tar=False,
                         include_build_scripts=False):
        location = os.path.abspath(location)
        location_parent = os.path.abspath(os.path.join(location, ".."))

        # Stage all our sources in a temporary directory. The this
        # directory can be used to either construct a tarball or moved
        # to the final desired location.
        temp_source_dir = tempfile.TemporaryDirectory(dir=location_parent)
        try:
            self._write_element_sources(temp_source_dir.name, elements)
            if include_build_scripts:
                self._write_build_scripts(temp_source_dir.name, elements)
            if tar:
                self._create_tarball(temp_source_dir.name, location)
            else:
                self._move_directory(temp_source_dir.name, location, force)
        except OSError as e:
            raise StreamError("Failed to checkout sources to {}: {}"
                              .format(location, e)) from e
        finally:
            with suppress(FileNotFoundError):
                temp_source_dir.cleanup()

    # Move a directory src to dest. This will work across devices and
    # may optionaly overwrite existing files.
    def _move_directory(self, src, dest, force=False):
        def is_empty_dir(path):
            return os.path.isdir(dest) and not os.listdir(dest)

        try:
            os.rename(src, dest)
            return
        except OSError:
            pass

        if force or is_empty_dir(dest):
            try:
                utils.link_files(src, dest)
            except utils.UtilError as e:
                raise StreamError("Failed to move directory: {}".format(e)) from e

    # Write the element build script to the given directory
    def _write_element_script(self, directory, element):
        try:
            element._write_script(directory)
        except ImplError:
            return False
        return True

    # Write all source elements to the given directory
    def _write_element_sources(self, directory, elements):
        for element in elements:
            element_source_dir = self._get_element_dirname(directory, element)
            if list(element.sources()):
                os.makedirs(element_source_dir)
                element._stage_sources_at(element_source_dir, mount_workspaces=False)

    # Create a tarball from the content of directory
    def _create_tarball(self, directory, tar_name):
        try:
            with utils.save_file_atomic(tar_name, mode='wb') as f:
                # This TarFile does not need to be explicitly closed
                # as the underlying file object will be closed be the
                # save_file_atomic contect manager
                tarball = tarfile.open(fileobj=f, mode='w')
                for item in os.listdir(str(directory)):
                    file_to_add = os.path.join(directory, item)
                    tarball.add(file_to_add, arcname=item)
        except OSError as e:
            raise StreamError("Failed to create tar archive: {}".format(e)) from e

    # Write all the build_scripts for elements in the directory location
    def _write_build_scripts(self, location, elements):
        for element in elements:
            self._write_element_script(location, element)
        self._write_master_build_script(location, elements)

    # Write a master build script to the sandbox
    def _write_master_build_script(self, directory, elements):

        module_string = ""
        for element in elements:
            module_string += shlex.quote(element.normal_name) + " "

        script_path = os.path.join(directory, "build.sh")

        with open(_site.build_all_template, "r") as f:
            script_template = f.read()

        with utils.save_file_atomic(script_path, "w") as script:
            script.write(script_template.format(modules=module_string))

        os.chmod(script_path, stat.S_IEXEC | stat.S_IREAD)

    # _get_element_dirname()
    #
    # Get path to directory for an element based on its normal name.
    #
    # For cross-junction elements, the path will be prefixed with the name
    # of the junction element.
    #
    # Args:
    #    directory (str): path to base directory
    #    element (Element): the element
    #
    # Returns:
    #    (str): Path to directory for this element
    #
    def _get_element_dirname(self, directory, element):
        parts = [element.normal_name]
        while element._get_project() != self._project:
            element = element._get_project().junction
            parts.append(element.normal_name)

        return os.path.join(directory, *reversed(parts))

    # _buildtree_pull_required()
    #
    # Check if current task, given config, requires element buildtree artifact
    #
    # Args:
    #    elements (list): elements to check if buildtrees are required
    #
    # Returns:
    #    (list): elements requiring buildtrees
    #
    def _buildtree_pull_required(self, elements):
        required_list = []

        # If context is set to not pull buildtrees, or no fetch remotes, return empty list
        if not self._context.pull_buildtrees or not self._artifacts.has_fetch_remotes():
            return required_list

        for element in elements:
            # Check if element is partially cached without its buildtree, as the element
            # artifact may not be cached at all
            if element._cached() and not element._cached_buildtree() and element._buildtree_exists():
                required_list.append(element)

        return required_list

    # _classify_artifacts()
    #
    # Split up a list of targets into element names and artifact refs
    #
    # Args:
    #    targets (list): A list of targets
    #
    # Returns:
    #    (list): element names present in the targets
    #    (list): artifact refs present in the targets
    #
    def _classify_artifacts(self, targets):
        element_targets = []
        artifact_refs = []
        element_globs = []
        artifact_globs = []

        for target in targets:
            if target.endswith('.bst'):
                if any(c in "*?[" for c in target):
                    element_globs.append(target)
                else:
                    element_targets.append(target)
            else:
                if any(c in "*?[" for c in target):
                    artifact_globs.append(target)
                else:
                    try:
                        verify_artifact_ref(target)
                    except ArtifactElementError:
                        element_targets.append(target)
                        continue
                    artifact_refs.append(target)

        if element_globs:
            for dirpath, _, filenames in os.walk(self._project.element_path):
                for filename in filenames:
                    element_path = os.path.join(dirpath, filename)
                    length = len(self._project.element_path) + 1
                    element_path = element_path[length:]  # Strip out the element_path

                    if any(fnmatch(element_path, glob) for glob in element_globs):
                        element_targets.append(element_path)

        if artifact_globs:
            for glob in artifact_globs:
                artifact_refs.extend(self._artifacts.list_artifacts(glob=glob))
            if not artifact_refs:
                self._message(MessageType.WARN, "No artifacts found for globs: {}".format(', '.join(artifact_globs)))

        return element_targets, artifact_refs