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|
#!/usr/bin/env python3
#
# Copyright (C) 2016 Codethink Limited
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2 of the License, or (at your option) any later version.
#
# This library is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this library. If not, see <http://www.gnu.org/licenses/>.
#
# Authors:
# Tristan Van Berkom <tristan.vanberkom@codethink.co.uk>
"""
Utilities
=========
"""
import os
import errno
import stat
import shutil
import string
import collections
import hashlib
import pickle
import calendar
import psutil
import subprocess
import signal
import re
import tempfile
import pkg_resources
from contextlib import contextmanager
from . import ProgramNotFoundError
from . import _yaml
from . import _signals
class FileListResult():
"""An object which stores the result of one of the operations
which run on a list of files.
"""
def __init__(self):
self.overwritten = []
"""List of files which were overwritten in the target directory"""
self.ignored = []
"""List of files which were ignored, because they would have
replaced a non empty directory"""
self.failed_attributes = []
"""List of files for which attributes could not be copied over"""
def list_relative_paths(directory):
"""A generator for walking directory relative paths
This generator is useful for checking the full manifest of
a directory.
Note that directories will be yielded only if they are
empty.
Symbolic links will not be followed, but will be included
in the manifest.
Args:
directory (str): The directory to list files in
Yields:
Relative filenames in `directory`
"""
for (dirpath, dirnames, filenames) in os.walk(directory):
relpath = os.path.relpath(dirpath, directory)
# We don't want "./" pre-pended to all the entries in the root of
# `directory`, prefer to have no prefix in that case.
basepath = relpath if relpath != '.' and dirpath != directory else ''
# os.walk does not decend into symlink directories, which
# makes sense because otherwise we might have redundant
# directories, or end up descending into directories outside
# of the walk() directory.
#
# But symlinks to directories are still identified as
# subdirectories in the walked `dirpath`, so we extract
# these symlinks from `dirnames`
#
for d in dirnames:
fullpath = os.path.join(dirpath, d)
if os.path.islink(fullpath):
yield os.path.join(basepath, d)
# We've decended into an empty directory, in this case we
# want to include the directory itself, but not in any other
# case.
if not filenames:
yield relpath
# List the filenames in the walked directory
for f in filenames:
yield os.path.join(basepath, f)
def glob(paths, pattern):
"""A generator to yield paths which match the glob pattern
Args:
paths (iterable): The paths to check
pattern (str): A glob pattern
This generator will iterate over the passed *paths* and
yield only the filenames which matched the provided *pattern*.
+--------+------------------------------------------------------------------+
| Meta | Description |
+========+==================================================================+
| \* | Zero or more of any character, excepting path separators |
+--------+------------------------------------------------------------------+
| \** | Zero or more of any character, including path separators |
+--------+------------------------------------------------------------------+
| ? | One of any character, except for path separators |
+--------+------------------------------------------------------------------+
| [abc] | One of any of the specified characters |
+--------+------------------------------------------------------------------+
| [a-z] | One of the characters in the specified range |
+--------+------------------------------------------------------------------+
| [!abc] | Any single character, except the specified characters |
+--------+------------------------------------------------------------------+
| [!a-z] | Any single character, except those in the specified range |
+--------+------------------------------------------------------------------+
.. note::
Escaping of the metacharacters is not possible
"""
# Ensure leading slash, just because we want patterns
# to match file lists regardless of whether the patterns
# or file lists had a leading slash or not.
if not pattern.startswith(os.sep):
pattern = os.sep + pattern
expression = _glob2re(pattern)
regexer = re.compile(expression)
for filename in paths:
filename_try = filename
if not filename_try.startswith(os.sep):
filename_try = os.sep + filename_try
if regexer.match(filename_try):
yield filename
def sha256sum(filename):
"""Calculate the sha256sum of a file
Args:
filename (str): A path to a file on disk
Returns:
(str): An sha256 checksum string
Raises:
OSError: In the case there was an issue opening
or reading `filename`
"""
h = hashlib.sha256()
with open(filename, "rb") as f:
for chunk in iter(lambda: f.read(4096), b""):
h.update(chunk)
return h.hexdigest()
def safe_copy(src, dest, result=None):
"""Copy a file while preserving attributes
Args:
src (str): The source filename
dest (str): The destination filename
result (:class:`~.FileListResult`): An optional collective result
Raises:
OSError: In the case of unexpected system call failures
shutil.Error: In case of unexpected system call failures
This is almost the same as shutil.copy2(), except that
we unlink *dest* before overwriting it if it exists, just
incase *dest* is a hardlink to a different file.
"""
# First unlink the target if it exists
try:
os.unlink(dest)
except OSError as e:
if e.errno != errno.ENOENT:
raise
shutil.copyfile(src, dest)
try:
shutil.copystat(src, dest)
except PermissionError:
# If we failed to copy over some file stats, dont treat
# it as an unrecoverable error, but provide some feedback
# we can use for a warning.
#
# This has a tendency of happening when attempting to copy
# over extended file attributes.
if result:
result.failed_attributes.append(dest)
pass
def safe_move(src, dest, result=None):
"""Move a file while preserving attributes
Args:
src (str): The source filename
dest (str): The destination filename
result (:class:`~.FileListResult`): An optional collective result
Raises:
OSError: In the case of unexpected system call failures
shutil.Error: In case of unexpected system call failures
This is almost the same as shutil.move(), except that
we unlink *dest* before overwriting it if it exists, just
incase *dest* is a hardlink to a different file.
"""
# First unlink the target if it exists
try:
os.unlink(dest)
except OSError as e:
if e.errno != errno.ENOENT:
raise
# Attempt rename, fallback to safe_copy()
try:
os.rename(src, dest)
except OSError as e:
if e.errno == errno.EXDEV:
safe_copy(src, dest)
else:
raise
def safe_link(src, dest, result=None):
"""Try to create a hardlink, but resort to copying in the case of cross device links.
Args:
src (str): The source filename
dest (str): The destination filename
result (:class:`~.FileListResult`): An optional collective result
Raises:
OSError: In the case of unexpected system call failures
shutil.Error: In case of unexpected system call failures
"""
# First unlink the target if it exists
try:
os.unlink(dest)
except OSError as e:
if e.errno != errno.ENOENT:
raise
# If we can't link it due to cross-device hardlink, copy
try:
os.link(src, dest)
except OSError as e:
if e.errno == errno.EXDEV:
safe_copy(src, dest)
else:
raise
def safe_remove(path):
"""Removes a file or directory
This will remove a file if it exists, and will
remove a directory if the directory is not empty.
Args:
path (str): The path to remove
Returns:
True if `path` was removed or did not exist, False
if `path` was a non empty directory.
Raises:
OSError: In the case of unexpected system call failures
"""
if os.path.lexists(path):
# Try to remove anything that is in the way, but issue
# a warning instead if it removes a non empty directory
try:
os.unlink(path)
except OSError as e:
if e.errno != errno.EISDIR:
raise
try:
os.rmdir(path)
except OSError as e:
if e.errno == errno.ENOTEMPTY:
return False
else:
raise
return True
def copy_files(src, dest, files=None, ignore_missing=False):
"""Copy files from source to destination.
Args:
src (str): The source file or directory
dest (str): The destination directory
files (list): Optional list of files in `src` to copy
ignore_missing (bool): Dont raise any error if a source file is missing
Returns:
(:class:`~.FileListResult`): The result describing what happened during this file operation
Raises:
OSError: In the case of unexpected system call failures
shutil.Error: In case of unexpected system call failures
.. note::
Directories in `dest` are replaced with files from `src`,
unless the existing directory in `dest` is not empty in which
case the path will be reported in the return value.
"""
if files is None:
files = list_relative_paths(src)
result = FileListResult()
_process_list(src, dest, files, safe_copy, result, ignore_missing=ignore_missing)
return result
def move_files(src, dest, files=None, ignore_missing=False):
"""Move files from source to destination.
Args:
src (str): The source file or directory
dest (str): The destination directory
files (list): Optional list of files in `src` to move
ignore_missing (bool): Dont raise any error if a source file is missing
Returns:
(:class:`~.FileListResult`): The result describing what happened during this file operation
Raises:
OSError: In the case of unexpected system call failures
shutil.Error: In case of unexpected system call failures
.. note::
Directories in `dest` are replaced with files from `src`,
unless the existing directory in `dest` is not empty in which
case the path will be reported in the return value.
"""
if files is None:
files = list_relative_paths(src)
result = FileListResult()
_process_list(src, dest, files, safe_move, result, ignore_missing=ignore_missing)
return result
def link_files(src, dest, files=None, ignore_missing=False):
"""Hardlink files from source to destination.
Args:
src (str): The source file or directory
dest (str): The destination directory
files (list): Optional list of files in `src` to link
ignore_missing (bool): Dont raise any error if a source file is missing
Returns:
(:class:`~.FileListResult`): The result describing what happened during this file operation
Raises:
OSError: In the case of unexpected system call failures
shutil.Error: In case of unexpected system call failures
.. note::
Directories in `dest` are replaced with files from `src`,
unless the existing directory in `dest` is not empty in which
case the path will be reported in the return value.
.. note::
If a hardlink cannot be created due to crossing filesystems,
then the file will be copied instead.
"""
if files is None:
files = list_relative_paths(src)
result = FileListResult()
_process_list(src, dest, files, safe_link, result, ignore_missing=ignore_missing)
return result
def get_host_tool(name):
"""Get the full path of a host tool
Args:
name (str): The name of the program to search for
Returns:
The full path to the program, if found
Raises:
:class:`.ProgramNotFoundError`
"""
search_path = os.environ.get('PATH')
program_path = shutil.which(name, path=search_path)
if not program_path:
raise ProgramNotFoundError("Did not find '%s' in PATH: %s" % (name, search_path))
return program_path
def url_directory_name(url):
"""Normalizes a url into a directory name
Args:
url (str): A url string
Returns:
A string which can be used as a directory name
"""
valid_chars = string.digits + string.ascii_letters + '%_'
def transl(x):
return x if x in valid_chars else '_'
return ''.join([transl(x) for x in url])
def get_bst_version():
"""Gets the major, minor release portion of the
BuildStream version.
Returns:
(int): The major version
(int): The minor version
"""
package = pkg_resources.require("buildstream")[0]
versions = package.version.split('.')[:2]
return (int(versions[0]), int(versions[1]))
# Recursively remove directories, ignoring file permissions as much as
# possible.
def _force_rmtree(rootpath, **kwargs):
for root, dirs, _ in os.walk(rootpath):
for d in dirs:
path = os.path.join(root, d.lstrip('/'))
if os.path.exists(path) and not os.path.islink(path):
os.chmod(path, 0o755)
shutil.rmtree(rootpath, **kwargs)
# Recursively make directories in target area
def _copy_directories(srcdir, destdir, target):
this_dir = os.path.dirname(target)
new_dir = os.path.join(destdir, this_dir)
if not os.path.lexists(new_dir):
if this_dir:
yield from _copy_directories(srcdir, destdir, this_dir)
old_dir = os.path.join(srcdir, this_dir)
if os.path.lexists(old_dir):
dir_stat = os.lstat(old_dir)
mode = dir_stat.st_mode
if stat.S_ISDIR(mode) or stat.S_ISLNK(mode):
os.makedirs(new_dir)
yield (new_dir, mode)
else:
raise OSError('Source directory tree has file where '
'directory expected: %s' % dir)
def _ensure_real_directory(root, destpath):
# The realpath in the sandbox may refer to a file outside of the
# sandbox when any of the direcory branches are a symlink to an
# absolute path.
#
# This should not happen as we rely on relative_symlink_target() below
# when staging the actual symlinks which may lead up to this path.
#
realpath = os.path.realpath(destpath)
if not realpath.startswith(os.path.realpath(root)):
raise IOError('Destination path resolves to a path outside ' +
'of the staging area\n\n' +
' Destination path: %s\n' % destpath +
' Real path: %s' % realpath)
# Ensure the real destination path exists before trying to get the mode
# of the real destination path.
#
# It is acceptable that chunks create symlinks inside artifacts which
# refer to non-existing directories, they will be created on demand here
# at staging time.
#
if not os.path.exists(realpath):
os.makedirs(realpath)
return realpath
# _process_list()
#
# Internal helper for copying/moving/linking file lists
#
# This will handle directories, symlinks and special files
# internally, the `actionfunc` will only be called for regular files.
#
# Args:
# srcdir: The source base directory
# destdir: The destination base directory
# filelist: List of relative file paths
# actionfunc: The function to call for regular files
# result: The FileListResult
# ignore_missing: Dont raise any error if a source file is missing
#
#
def _process_list(srcdir, destdir, filelist, actionfunc, result, ignore_missing=False):
# Keep track of directory permissions, since these need to be set
# *after* files have been written.
permissions = []
# Note we consume the filelist (which is a generator and not a list)
# by sorting it, this is necessary to ensure that we processes symbolic
# links which lead to directories before processing files inside those
# directories.
#
for path in sorted(filelist):
srcpath = os.path.join(srcdir, path)
destpath = os.path.join(destdir, path)
# Collect overlaps
if os.path.lexists(destpath) and not os.path.isdir(destpath):
result.overwritten.append(path)
# The destination directory may not have been created separately
permissions.extend(_copy_directories(srcdir, destdir, path))
# Ensure that broken symlinks to directories have their targets
# created before attempting to stage files across broken
# symlink boundaries
_ensure_real_directory(destdir, os.path.dirname(destpath))
try:
file_stat = os.lstat(srcpath)
mode = file_stat.st_mode
except FileNotFoundError:
# Skip this missing file
if ignore_missing:
continue
else:
raise
if stat.S_ISDIR(mode):
# Ensure directory exists in destination
if not os.path.exists(destpath):
_ensure_real_directory(destdir, destpath)
dest_stat = os.lstat(os.path.realpath(destpath))
if not stat.S_ISDIR(dest_stat.st_mode):
raise OSError('Destination not a directory. source has %s'
' destination has %s' % (srcpath, destpath))
permissions.append((destpath, os.stat(srcpath).st_mode))
elif stat.S_ISLNK(mode):
if not safe_remove(destpath):
result.ignored.append(path)
continue
target = os.readlink(srcpath)
target = _relative_symlink_target(destdir, destpath, target)
os.symlink(target, destpath)
elif stat.S_ISREG(mode):
# Process the file.
if not safe_remove(destpath):
result.ignored.append(path)
continue
actionfunc(srcpath, destpath, result=result)
elif stat.S_ISCHR(mode) or stat.S_ISBLK(mode):
# Block or character device. Put contents of st_dev in a mknod.
if not safe_remove(destpath):
result.ignored.append(path)
continue
if os.path.lexists(destpath):
os.remove(destpath)
os.mknod(destpath, file_stat.st_mode, file_stat.st_rdev)
os.chmod(destpath, file_stat.st_mode)
else:
# Unsupported type.
raise OSError('Cannot extract %s into staging-area. Unsupported type.' % srcpath)
# Write directory permissions now that all files have been written
for d, perms in permissions:
os.chmod(d, perms)
# _relative_symlink_target()
#
# Fetches a relative path for symlink with an absolute target
#
# @root: The staging area root location
# @symlink: Location of the symlink in staging area (including the root path)
# @target: The symbolic link target, which may be an absolute path
#
# If @target is an absolute path, a relative path from the symbolic link
# location will be returned, otherwise if @target is a relative path, it will
# be returned unchanged.
#
# Using relative symlinks helps to keep the target self contained when staging
# files onto the target.
#
def _relative_symlink_target(root, symlink, target):
if os.path.isabs(target):
# First fix the input a little, the symlink itself must not have a
# trailing slash, otherwise we fail to remove the symlink filename
# from its directory components in os.path.split()
#
# The absolute target filename must have its leading separator
# removed, otherwise os.path.join() will discard the prefix
symlink = symlink.rstrip(os.path.sep)
target = target.lstrip(os.path.sep)
# We want a relative path from the directory in which symlink
# is located, not from the symlink itself.
symlinkdir, _ = os.path.split(os.path.realpath(symlink))
# Create a full path to the target, including the leading staging
# directory
fulltarget = os.path.join(os.path.realpath(root), target)
# now get the relative path from the directory where the symlink
# is located within the staging root, to the target within the same
# staging root
newtarget = os.path.relpath(fulltarget, symlinkdir)
return newtarget
else:
return target
# _generate_key()
#
# Generate an sha256 hex digest from the given value. The value
# can be a simple value or recursive dictionary with lists etc,
# anything simple enough to serialize.
#
# Args:
# value: A value to get a key for
#
# Returns:
# (str): An sha256 hex digest of the given value
#
def _generate_key(value):
ordered = _yaml.node_sanitize(value)
string = pickle.dumps(ordered)
return hashlib.sha256(string).hexdigest()
# _set_deterministic_user()
#
# Set the uid/gid for every file in a directory tree to the process'
# euid/guid.
#
# Args:
# directory (str): The directory to recursively set the uid/gid on
#
def _set_deterministic_user(directory):
user = os.geteuid()
group = os.getegid()
for root, dirs, files in os.walk(directory.encode("utf-8"), topdown=False):
for filename in files:
os.chown(os.path.join(root, filename), user, group, follow_symlinks=False)
for dirname in dirs:
os.chown(os.path.join(root, dirname), user, group, follow_symlinks=False)
# _set_deterministic_mtime()
#
# Set the mtime for every file in a directory tree to the same.
#
# Args:
# directory (str): The directory to recursively set the mtime on
#
def _set_deterministic_mtime(directory):
# The magic number for timestamps: 2011-11-11 11:11:11
magic_timestamp = calendar.timegm([2011, 11, 11, 11, 11, 11])
for dirname, _, filenames in os.walk(directory.encode("utf-8"), topdown=False):
for filename in filenames:
pathname = os.path.join(dirname, filename)
# Python's os.utime only ever modifies the timestamp
# of the target, it is not acceptable to set the timestamp
# of the target here, if we are staging the link target we
# will also set its timestamp.
#
# We should however find a way to modify the actual link's
# timestamp, this outdated python bug report claims that
# it is impossible:
#
# http://bugs.python.org/issue623782
#
# However, nowadays it is possible at least on gnuish systems
# with with the lutimes glibc function.
if not os.path.islink(pathname):
os.utime(pathname, (magic_timestamp, magic_timestamp))
os.utime(dirname, (magic_timestamp, magic_timestamp))
# _tempdir()
#
# A context manager for doing work in a temporary directory.
#
# Args:
# dir (str): A path to a parent directory for the temporary directory
# suffix (str): A suffix for the temproary directory name
# prefix (str): A prefix for the temporary directory name
#
# Yields:
# (str): The temporary directory
#
# In addition to the functionality provided by python's
# tempfile.TemporaryDirectory() context manager, this one additionally
# supports cleaning up the temp directory on SIGTERM.
#
@contextmanager
def _tempdir(suffix="", prefix="tmp", dir=None):
tempdir = tempfile.mkdtemp(suffix=suffix, prefix=prefix, dir=dir)
def cleanup_tempdir():
if os.path.isdir(tempdir):
shutil.rmtree(tempdir)
with _signals.terminator(cleanup_tempdir):
yield tempdir
cleanup_tempdir()
# _kill_process_tree()
#
# Brutally murder a process and all of it's children
#
# Args:
# pid (int): Process ID
#
def _kill_process_tree(pid):
proc = psutil.Process(pid)
children = proc.children(recursive=True)
def kill_proc(p):
try:
p.kill()
except psutil.AccessDenied:
# Ignore this error, it can happen with
# some setuid bwrap processes.
pass
# Bloody Murder
for child in children:
kill_proc(child)
kill_proc(proc)
# _call()
#
# A wrapper for subprocess.call() supporting suspend and resum
#
# Args:
# popenargs (list): Popen() arguments
# terminate (bool): Whether to attempt graceful termination before killing
# rest_of_args (kwargs): Remaining arguments to subprocess.call()
#
# Returns:
# (int): The process exit code.
# (str): The program output.
#
def _call(*popenargs, terminate=False, **kwargs):
kwargs['start_new_session'] = True
# Handle termination, suspend and resume
def kill_proc():
if process:
# Some callers know that their subprocess can be
# gracefully terminated, make an attempt first
if terminate:
proc = psutil.Process(process.pid)
proc.terminate()
exit_code = None
try:
exit_code = proc.wait(20)
except psutil.TimeoutExpired:
# Did not terminate within the timeout: murder
_kill_process_tree(process.pid)
else:
# FIXME: This is a brutal but reliable approach
#
# Other variations I've tried which try SIGTERM first
# and then wait for child processes to exit gracefully
# have not reliably cleaned up process trees and have
# left orphaned git or ssh processes alive.
#
# This cleans up the subprocesses reliably but may
# cause side effects such as possibly leaving stale
# locks behind. Hopefully this should not be an issue
# as long as any child processes only interact with
# the temp directories which we control and cleanup
# ourselves.
#
_kill_process_tree(process.pid)
def suspend_proc():
if process:
group_id = os.getpgid(process.pid)
os.killpg(group_id, signal.SIGSTOP)
def resume_proc():
if process:
group_id = os.getpgid(process.pid)
os.killpg(group_id, signal.SIGCONT)
with _signals.suspendable(suspend_proc, resume_proc), _signals.terminator(kill_proc):
process = subprocess.Popen(*popenargs, **kwargs)
output, _ = process.communicate()
exit_code = process.poll()
# Program output is returned as bytes, we want utf8 strings
if output is not None:
output = output.decode('UTF-8')
return (exit_code, output)
# _glob2re()
#
# Function to translate a glob style pattern into a regex
#
# Args:
# pat (str): The glob pattern
#
# This is a modified version of the python standard library's
# fnmatch.translate() function which supports path like globbing
# a bit more correctly, and additionally supports recursive glob
# patterns with double asterisk.
#
# Note that this will only support the most basic of standard
# glob patterns, and additionally the recursive double asterisk.
#
# Support includes:
#
# * Match any pattern except a path separator
# ** Match any pattern, including path separators
# ? Match any single character
# [abc] Match one of the specified characters
# [A-Z] Match one of the characters in the specified range
# [!abc] Match any single character, except the specified characters
# [!A-Z] Match any single character, except those in the specified range
#
def _glob2re(pat):
i, n = 0, len(pat)
res = ''
while i < n:
c = pat[i]
i = i + 1
if c == '*':
# fnmatch.translate() simply uses the '.*' separator here,
# we only want that for double asterisk (bash 'globstar' behavior)
#
if i < n and pat[i] == '*':
res = res + '.*'
i = i + 1
else:
res = res + '[^/]*'
elif c == '?':
# fnmatch.translate() simply uses the '.' wildcard here, but
# we dont want to match path separators here
res = res + '[^/]'
elif c == '[':
j = i
if j < n and pat[j] == '!':
j = j + 1
if j < n and pat[j] == ']':
j = j + 1
while j < n and pat[j] != ']':
j = j + 1
if j >= n:
res = res + '\\['
else:
stuff = pat[i:j].replace('\\', '\\\\')
i = j + 1
if stuff[0] == '!':
stuff = '^' + stuff[1:]
elif stuff[0] == '^':
stuff = '\\' + stuff
res = '%s[%s]' % (res, stuff)
else:
res = res + re.escape(c)
return res + '\Z(?ms)'
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