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We want to move our morphologies in our definitions repository into
subdirectories, so they're more organised.
We'd prefer to only refer to morphologies by file path, rather than a
name that loosely corresponds to the file path, but we need to support
that for backwards compatibility until we can move all of our
morphologies into the definitions repository.
However, since we want to eventually remove this, and we want to ensure
that file paths work, we change the yarn tests to use file paths.
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morph build the system... doesn't need the repository to be specified,
just the branch; morph is able to work it out for itself.
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The new build code uses `git update-index --add`, which means it can use
morphologies that haven't previously been added.
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It doesn't make sense to be able to specify an architecture from the
IMPLEMENTS name, since you either need your architecture for something
to build, or testarch for something that consistently doesn't build.
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