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Be consistent about placement of test description, blank lines, etc.
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This requires running git-daemon manually in the tests.
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This gives us consistency with morphologies, where the triplets are
repo|ref|morphology, not repo|ref|filename
Anyone who runs 'morph build baserock:morphs master system.morph' will
now see an error ending with 'was looking for system.morph.morph', which
should make it clear where they have gone wrong.
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The test creates a repository with an empty commit to be a submodule,
alters the chunk to have this repository as a submodule, then after
building checks whether each of the repositories have been cached.
This is tested by testing if the repositories are in there rather than
listing all the repositories because the normalisation fails when the
URIs have been mangled
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