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get_uncommitted_changes() is needed for morph status to tell if git
repositories have changes in them.
_get_status() is private, since it does not currently have a user, the
small amount of code in get_uncommitted_changes() wrapping _get_status()
is in the GitDirectory class instead of the branch and merge plugin,
since `morph build` will also need to know about uncommitted changes.
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This is needed for status to tell if a repo is checked out in an
unexpected branch.
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This adds methods to list and read files. The difference between doing
this to a commit and the currrent working tree is abstracted over by
whether the passed ref is None or omitted.
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This is needed when we load morphologies in "morph edit": it needs
to load things differently depending on whether we're loading from
the currently checked out ref or not.
The new method does not have a unit test, because I'm betting that
the test would not find a real bug. The test would just set up a
git repo and check whether the right ref is checked out in a couple
of ways (it is, and it isn't), and the code is simple enough that
it's unlikely to break the test. Creating the test, however, is a
fair bit of work. What the test would not catch is when we need the
method to do something quite different, but then we'll want a new
method anyway.
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