import pytest import networkx as nx from networkx.utils import nodes_equal, edges_equal, graphs_equal from networkx.convert import ( to_networkx_graph, to_dict_of_dicts, from_dict_of_dicts, to_dict_of_lists, from_dict_of_lists, ) from networkx.generators.classic import barbell_graph, cycle_graph class TestConvert: def edgelists_equal(self, e1, e2): return sorted(sorted(e) for e in e1) == sorted(sorted(e) for e in e2) def test_simple_graphs(self): for dest, source in [ (to_dict_of_dicts, from_dict_of_dicts), (to_dict_of_lists, from_dict_of_lists), ]: G = barbell_graph(10, 3) G.graph = {} dod = dest(G) # Dict of [dicts, lists] GG = source(dod) assert graphs_equal(G, GG) GW = to_networkx_graph(dod) assert graphs_equal(G, GW) GI = nx.Graph(dod) assert graphs_equal(G, GI) # With nodelist keyword P4 = nx.path_graph(4) P3 = nx.path_graph(3) P4.graph = {} P3.graph = {} dod = dest(P4, nodelist=[0, 1, 2]) Gdod = nx.Graph(dod) assert graphs_equal(Gdod, P3) def test_exceptions(self): # NX graph class G: adj = None pytest.raises(nx.NetworkXError, to_networkx_graph, G) # pygraphviz agraph class G: is_strict = None pytest.raises(nx.NetworkXError, to_networkx_graph, G) # Dict of [dicts, lists] G = {"a": 0} pytest.raises(TypeError, to_networkx_graph, G) # list or generator of edges class G: next = None pytest.raises(nx.NetworkXError, to_networkx_graph, G) # no match pytest.raises(nx.NetworkXError, to_networkx_graph, "a") def test_digraphs(self): for dest, source in [ (to_dict_of_dicts, from_dict_of_dicts), (to_dict_of_lists, from_dict_of_lists), ]: G = cycle_graph(10) # Dict of [dicts, lists] dod = dest(G) GG = source(dod) assert nodes_equal(sorted(G.nodes()), sorted(GG.nodes())) assert edges_equal(sorted(G.edges()), sorted(GG.edges())) GW = to_networkx_graph(dod) assert nodes_equal(sorted(G.nodes()), sorted(GW.nodes())) assert edges_equal(sorted(G.edges()), sorted(GW.edges())) GI = nx.Graph(dod) assert nodes_equal(sorted(G.nodes()), sorted(GI.nodes())) assert edges_equal(sorted(G.edges()), sorted(GI.edges())) G = cycle_graph(10, create_using=nx.DiGraph) dod = dest(G) GG = source(dod, create_using=nx.DiGraph) assert sorted(G.nodes()) == sorted(GG.nodes()) assert sorted(G.edges()) == sorted(GG.edges()) GW = to_networkx_graph(dod, create_using=nx.DiGraph) assert sorted(G.nodes()) == sorted(GW.nodes()) assert sorted(G.edges()) == sorted(GW.edges()) GI = nx.DiGraph(dod) assert sorted(G.nodes()) == sorted(GI.nodes()) assert sorted(G.edges()) == sorted(GI.edges()) def test_graph(self): g = nx.cycle_graph(10) G = nx.Graph() G.add_nodes_from(g) G.add_weighted_edges_from((u, v, u) for u, v in g.edges()) # Dict of dicts dod = to_dict_of_dicts(G) GG = from_dict_of_dicts(dod, create_using=nx.Graph) assert nodes_equal(sorted(G.nodes()), sorted(GG.nodes())) assert edges_equal(sorted(G.edges()), sorted(GG.edges())) GW = to_networkx_graph(dod, create_using=nx.Graph) assert nodes_equal(sorted(G.nodes()), sorted(GW.nodes())) assert edges_equal(sorted(G.edges()), sorted(GW.edges())) GI = nx.Graph(dod) assert sorted(G.nodes()) == sorted(GI.nodes()) assert sorted(G.edges()) == sorted(GI.edges()) # Dict of lists dol = to_dict_of_lists(G) GG = from_dict_of_lists(dol, create_using=nx.Graph) # dict of lists throws away edge data so set it to none enone = [(u, v, {}) for (u, v, d) in G.edges(data=True)] assert nodes_equal(sorted(G.nodes()), sorted(GG.nodes())) assert edges_equal(enone, sorted(GG.edges(data=True))) GW = to_networkx_graph(dol, create_using=nx.Graph) assert nodes_equal(sorted(G.nodes()), sorted(GW.nodes())) assert edges_equal(enone, sorted(GW.edges(data=True))) GI = nx.Graph(dol) assert nodes_equal(sorted(G.nodes()), sorted(GI.nodes())) assert edges_equal(enone, sorted(GI.edges(data=True))) def test_with_multiedges_self_loops(self): G = cycle_graph(10) XG = nx.Graph() XG.add_nodes_from(G) XG.add_weighted_edges_from((u, v, u) for u, v in G.edges()) XGM = nx.MultiGraph() XGM.add_nodes_from(G) XGM.add_weighted_edges_from((u, v, u) for u, v in G.edges()) XGM.add_edge(0, 1, weight=2) # multiedge XGS = nx.Graph() XGS.add_nodes_from(G) XGS.add_weighted_edges_from((u, v, u) for u, v in G.edges()) XGS.add_edge(0, 0, weight=100) # self loop # Dict of dicts # with self loops, OK dod = to_dict_of_dicts(XGS) GG = from_dict_of_dicts(dod, create_using=nx.Graph) assert nodes_equal(XGS.nodes(), GG.nodes()) assert edges_equal(XGS.edges(), GG.edges()) GW = to_networkx_graph(dod, create_using=nx.Graph) assert nodes_equal(XGS.nodes(), GW.nodes()) assert edges_equal(XGS.edges(), GW.edges()) GI = nx.Graph(dod) assert nodes_equal(XGS.nodes(), GI.nodes()) assert edges_equal(XGS.edges(), GI.edges()) # Dict of lists # with self loops, OK dol = to_dict_of_lists(XGS) GG = from_dict_of_lists(dol, create_using=nx.Graph) # dict of lists throws away edge data so set it to none enone = [(u, v, {}) for (u, v, d) in XGS.edges(data=True)] assert nodes_equal(sorted(XGS.nodes()), sorted(GG.nodes())) assert edges_equal(enone, sorted(GG.edges(data=True))) GW = to_networkx_graph(dol, create_using=nx.Graph) assert nodes_equal(sorted(XGS.nodes()), sorted(GW.nodes())) assert edges_equal(enone, sorted(GW.edges(data=True))) GI = nx.Graph(dol) assert nodes_equal(sorted(XGS.nodes()), sorted(GI.nodes())) assert edges_equal(enone, sorted(GI.edges(data=True))) # Dict of dicts # with multiedges, OK dod = to_dict_of_dicts(XGM) GG = from_dict_of_dicts(dod, create_using=nx.MultiGraph, multigraph_input=True) assert nodes_equal(sorted(XGM.nodes()), sorted(GG.nodes())) assert edges_equal(sorted(XGM.edges()), sorted(GG.edges())) GW = to_networkx_graph(dod, create_using=nx.MultiGraph, multigraph_input=True) assert nodes_equal(sorted(XGM.nodes()), sorted(GW.nodes())) assert edges_equal(sorted(XGM.edges()), sorted(GW.edges())) GI = nx.MultiGraph(dod) # convert can't tell whether to duplicate edges! assert nodes_equal(sorted(XGM.nodes()), sorted(GI.nodes())) # assert_not_equal(sorted(XGM.edges()), sorted(GI.edges())) assert not sorted(XGM.edges()) == sorted(GI.edges()) GE = from_dict_of_dicts(dod, create_using=nx.MultiGraph, multigraph_input=False) assert nodes_equal(sorted(XGM.nodes()), sorted(GE.nodes())) assert sorted(XGM.edges()) != sorted(GE.edges()) GI = nx.MultiGraph(XGM) assert nodes_equal(sorted(XGM.nodes()), sorted(GI.nodes())) assert edges_equal(sorted(XGM.edges()), sorted(GI.edges())) GM = nx.MultiGraph(G) assert nodes_equal(sorted(GM.nodes()), sorted(G.nodes())) assert edges_equal(sorted(GM.edges()), sorted(G.edges())) # Dict of lists # with multiedges, OK, but better write as DiGraph else you'll # get double edges dol = to_dict_of_lists(G) GG = from_dict_of_lists(dol, create_using=nx.MultiGraph) assert nodes_equal(sorted(G.nodes()), sorted(GG.nodes())) assert edges_equal(sorted(G.edges()), sorted(GG.edges())) GW = to_networkx_graph(dol, create_using=nx.MultiGraph) assert nodes_equal(sorted(G.nodes()), sorted(GW.nodes())) assert edges_equal(sorted(G.edges()), sorted(GW.edges())) GI = nx.MultiGraph(dol) assert nodes_equal(sorted(G.nodes()), sorted(GI.nodes())) assert edges_equal(sorted(G.edges()), sorted(GI.edges())) def test_edgelists(self): P = nx.path_graph(4) e = [(0, 1), (1, 2), (2, 3)] G = nx.Graph(e) assert nodes_equal(sorted(G.nodes()), sorted(P.nodes())) assert edges_equal(sorted(G.edges()), sorted(P.edges())) assert edges_equal(sorted(G.edges(data=True)), sorted(P.edges(data=True))) e = [(0, 1, {}), (1, 2, {}), (2, 3, {})] G = nx.Graph(e) assert nodes_equal(sorted(G.nodes()), sorted(P.nodes())) assert edges_equal(sorted(G.edges()), sorted(P.edges())) assert edges_equal(sorted(G.edges(data=True)), sorted(P.edges(data=True))) e = ((n, n + 1) for n in range(3)) G = nx.Graph(e) assert nodes_equal(sorted(G.nodes()), sorted(P.nodes())) assert edges_equal(sorted(G.edges()), sorted(P.edges())) assert edges_equal(sorted(G.edges(data=True)), sorted(P.edges(data=True))) def test_directed_to_undirected(self): edges1 = [(0, 1), (1, 2), (2, 0)] edges2 = [(0, 1), (1, 2), (0, 2)] assert self.edgelists_equal(nx.Graph(nx.DiGraph(edges1)).edges(), edges1) assert self.edgelists_equal(nx.Graph(nx.DiGraph(edges2)).edges(), edges1) assert self.edgelists_equal(nx.MultiGraph(nx.DiGraph(edges1)).edges(), edges1) assert self.edgelists_equal(nx.MultiGraph(nx.DiGraph(edges2)).edges(), edges1) assert self.edgelists_equal( nx.MultiGraph(nx.MultiDiGraph(edges1)).edges(), edges1 ) assert self.edgelists_equal( nx.MultiGraph(nx.MultiDiGraph(edges2)).edges(), edges1 ) assert self.edgelists_equal(nx.Graph(nx.MultiDiGraph(edges1)).edges(), edges1) assert self.edgelists_equal(nx.Graph(nx.MultiDiGraph(edges2)).edges(), edges1) def test_attribute_dict_integrity(self): # we must not replace dict-like graph data structures with dicts G = nx.OrderedGraph() G.add_nodes_from("abc") H = to_networkx_graph(G, create_using=nx.OrderedGraph) assert list(H.nodes) == list(G.nodes) H = nx.OrderedDiGraph(G) assert list(H.nodes) == list(G.nodes) def test_to_edgelist(self): G = nx.Graph([(1, 1)]) elist = nx.to_edgelist(G, nodelist=list(G)) assert edges_equal(G.edges(data=True), elist) def test_custom_node_attr_dict_safekeeping(self): class custom_dict(dict): pass class Custom(nx.Graph): node_attr_dict_factory = custom_dict g = nx.Graph() g.add_node(1, weight=1) h = Custom(g) assert isinstance(g._node[1], dict) assert isinstance(h._node[1], custom_dict) # this raise exception # h._node.update((n, dd.copy()) for n, dd in g.nodes.items()) # assert isinstance(h._node[1], custom_dict) @pytest.mark.parametrize( "edgelist", ( # Graph with no edge data [(0, 1), (1, 2)], # Graph with edge data [(0, 1, {"weight": 1.0}), (1, 2, {"weight": 2.0})], ), ) def test_to_dict_of_dicts_with_edgedata_param(edgelist): G = nx.Graph() G.add_edges_from(edgelist) # Innermost dict value == edge_data when edge_data != None. # In the case when G has edge data, it is overwritten expected = {0: {1: 10}, 1: {0: 10, 2: 10}, 2: {1: 10}} assert nx.to_dict_of_dicts(G, edge_data=10) == expected def test_to_dict_of_dicts_with_edgedata_and_nodelist(): G = nx.path_graph(5) nodelist = [2, 3, 4] expected = {2: {3: 10}, 3: {2: 10, 4: 10}, 4: {3: 10}} assert nx.to_dict_of_dicts(G, nodelist=nodelist, edge_data=10) == expected def test_to_dict_of_dicts_with_edgedata_multigraph(): """Multi edge data overwritten when edge_data != None""" G = nx.MultiGraph() G.add_edge(0, 1, key="a") G.add_edge(0, 1, key="b") # Multi edge data lost when edge_data is not None expected = {0: {1: 10}, 1: {0: 10}} assert nx.to_dict_of_dicts(G, edge_data=10) == expected def test_to_networkx_graph_non_edgelist(): invalid_edgelist = [1, 2, 3] with pytest.raises(nx.NetworkXError, match="Input is not a valid edge list"): nx.to_networkx_graph(invalid_edgelist)