""" Unit tests for edgelists. """ import pytest import io import tempfile import os import textwrap import networkx as nx from networkx.utils import nodes_equal, edges_equal, graphs_equal edges_no_data = textwrap.dedent( """ # comment line 1 2 # comment line 2 3 """ ) edges_with_values = textwrap.dedent( """ # comment line 1 2 2.0 # comment line 2 3 3.0 """ ) edges_with_weight = textwrap.dedent( """ # comment line 1 2 {'weight':2.0} # comment line 2 3 {'weight':3.0} """ ) edges_with_multiple_attrs = textwrap.dedent( """ # comment line 1 2 {'weight':2.0, 'color':'green'} # comment line 2 3 {'weight':3.0, 'color':'red'} """ ) edges_with_multiple_attrs_csv = textwrap.dedent( """ # comment line 1, 2, {'weight':2.0, 'color':'green'} # comment line 2, 3, {'weight':3.0, 'color':'red'} """ ) _expected_edges_weights = [(1, 2, {"weight": 2.0}), (2, 3, {"weight": 3.0})] _expected_edges_multiattr = [ (1, 2, {"weight": 2.0, "color": "green"}), (2, 3, {"weight": 3.0, "color": "red"}), ] @pytest.mark.parametrize( ("data", "extra_kwargs"), ( (edges_no_data, {}), (edges_with_values, {}), (edges_with_weight, {}), (edges_with_multiple_attrs, {}), (edges_with_multiple_attrs_csv, {"delimiter": ","}), ), ) def test_read_edgelist_no_data(data, extra_kwargs): bytesIO = io.BytesIO(data.encode("utf-8")) G = nx.read_edgelist(bytesIO, nodetype=int, data=False, **extra_kwargs) assert edges_equal(G.edges(), [(1, 2), (2, 3)]) def test_read_weighted_edgelist(): bytesIO = io.BytesIO(edges_with_values.encode("utf-8")) G = nx.read_weighted_edgelist(bytesIO, nodetype=int) assert edges_equal(G.edges(data=True), _expected_edges_weights) @pytest.mark.parametrize( ("data", "extra_kwargs", "expected"), ( (edges_with_weight, {}, _expected_edges_weights), (edges_with_multiple_attrs, {}, _expected_edges_multiattr), (edges_with_multiple_attrs_csv, {"delimiter": ","}, _expected_edges_multiattr), ), ) def test_read_edgelist_with_data(data, extra_kwargs, expected): bytesIO = io.BytesIO(data.encode("utf-8")) G = nx.read_edgelist(bytesIO, nodetype=int, **extra_kwargs) assert edges_equal(G.edges(data=True), expected) @pytest.fixture def example_graph(): G = nx.Graph() G.add_weighted_edges_from([(1, 2, 3.0), (2, 3, 27.0), (3, 4, 3.0)]) return G def test_parse_edgelist_no_data(example_graph): G = example_graph H = nx.parse_edgelist(["1 2", "2 3", "3 4"], nodetype=int) assert nodes_equal(G.nodes, H.nodes) assert edges_equal(G.edges, H.edges) def test_parse_edgelist_with_data_dict(example_graph): G = example_graph H = nx.parse_edgelist( ["1 2 {'weight': 3}", "2 3 {'weight': 27}", "3 4 {'weight': 3.0}"], nodetype=int ) assert nodes_equal(G.nodes, H.nodes) assert edges_equal(G.edges(data=True), H.edges(data=True)) def test_parse_edgelist_with_data_list(example_graph): G = example_graph H = nx.parse_edgelist( ["1 2 3", "2 3 27", "3 4 3.0"], nodetype=int, data=(("weight", float),) ) assert nodes_equal(G.nodes, H.nodes) assert edges_equal(G.edges(data=True), H.edges(data=True)) def test_parse_edgelist(): # ignore lines with less than 2 nodes lines = ["1;2", "2 3", "3 4"] G = nx.parse_edgelist(lines, nodetype=int) assert list(G.edges()) == [(2, 3), (3, 4)] # unknown nodetype with pytest.raises(TypeError, match="Failed to convert nodes"): lines = ["1 2", "2 3", "3 4"] nx.parse_edgelist(lines, nodetype="nope") # lines have invalid edge format with pytest.raises(TypeError, match="Failed to convert edge data"): lines = ["1 2 3", "2 3", "3 4"] nx.parse_edgelist(lines, nodetype=int) # edge data and data_keys not the same length with pytest.raises(IndexError, match="not the same length"): lines = ["1 2 3", "2 3 27", "3 4 3.0"] nx.parse_edgelist( lines, nodetype=int, data=(("weight", float), ("capacity", int)) ) # edge data can't be converted to edge type with pytest.raises(TypeError, match="Failed to convert"): lines = ["1 2 't1'", "2 3 't3'", "3 4 't3'"] nx.parse_edgelist(lines, nodetype=int, data=(("weight", float),)) def test_comments_None(): edgelist = ["node#1 node#2", "node#2 node#3"] # comments=None supported to ignore all comment characters G = nx.parse_edgelist(edgelist, comments=None) H = nx.Graph([e.split(" ") for e in edgelist]) assert edges_equal(G.edges, H.edges) class TestEdgelist: @classmethod def setup_class(cls): cls.G = nx.Graph(name="test") e = [("a", "b"), ("b", "c"), ("c", "d"), ("d", "e"), ("e", "f"), ("a", "f")] cls.G.add_edges_from(e) cls.G.add_node("g") cls.DG = nx.DiGraph(cls.G) cls.XG = nx.MultiGraph() cls.XG.add_weighted_edges_from([(1, 2, 5), (1, 2, 5), (1, 2, 1), (3, 3, 42)]) cls.XDG = nx.MultiDiGraph(cls.XG) def test_write_edgelist_1(self): fh = io.BytesIO() G = nx.OrderedGraph() G.add_edges_from([(1, 2), (2, 3)]) nx.write_edgelist(G, fh, data=False) fh.seek(0) assert fh.read() == b"1 2\n2 3\n" def test_write_edgelist_2(self): fh = io.BytesIO() G = nx.OrderedGraph() G.add_edges_from([(1, 2), (2, 3)]) nx.write_edgelist(G, fh, data=True) fh.seek(0) assert fh.read() == b"1 2 {}\n2 3 {}\n" def test_write_edgelist_3(self): fh = io.BytesIO() G = nx.OrderedGraph() G.add_edge(1, 2, weight=2.0) G.add_edge(2, 3, weight=3.0) nx.write_edgelist(G, fh, data=True) fh.seek(0) assert fh.read() == b"1 2 {'weight': 2.0}\n2 3 {'weight': 3.0}\n" def test_write_edgelist_4(self): fh = io.BytesIO() G = nx.OrderedGraph() G.add_edge(1, 2, weight=2.0) G.add_edge(2, 3, weight=3.0) nx.write_edgelist(G, fh, data=[("weight")]) fh.seek(0) assert fh.read() == b"1 2 2.0\n2 3 3.0\n" def test_unicode(self): G = nx.Graph() name1 = chr(2344) + chr(123) + chr(6543) name2 = chr(5543) + chr(1543) + chr(324) G.add_edge(name1, "Radiohead", **{name2: 3}) fd, fname = tempfile.mkstemp() nx.write_edgelist(G, fname) H = nx.read_edgelist(fname) assert graphs_equal(G, H) os.close(fd) os.unlink(fname) def test_latin1_issue(self): G = nx.Graph() name1 = chr(2344) + chr(123) + chr(6543) name2 = chr(5543) + chr(1543) + chr(324) G.add_edge(name1, "Radiohead", **{name2: 3}) fd, fname = tempfile.mkstemp() pytest.raises( UnicodeEncodeError, nx.write_edgelist, G, fname, encoding="latin-1" ) os.close(fd) os.unlink(fname) def test_latin1(self): G = nx.Graph() name1 = "Bj" + chr(246) + "rk" name2 = chr(220) + "ber" G.add_edge(name1, "Radiohead", **{name2: 3}) fd, fname = tempfile.mkstemp() nx.write_edgelist(G, fname, encoding="latin-1") H = nx.read_edgelist(fname, encoding="latin-1") assert graphs_equal(G, H) os.close(fd) os.unlink(fname) def test_edgelist_graph(self): G = self.G (fd, fname) = tempfile.mkstemp() nx.write_edgelist(G, fname) H = nx.read_edgelist(fname) H2 = nx.read_edgelist(fname) assert H is not H2 # they should be different graphs G.remove_node("g") # isolated nodes are not written in edgelist assert nodes_equal(list(H), list(G)) assert edges_equal(list(H.edges()), list(G.edges())) os.close(fd) os.unlink(fname) def test_edgelist_digraph(self): G = self.DG (fd, fname) = tempfile.mkstemp() nx.write_edgelist(G, fname) H = nx.read_edgelist(fname, create_using=nx.DiGraph()) H2 = nx.read_edgelist(fname, create_using=nx.DiGraph()) assert H is not H2 # they should be different graphs G.remove_node("g") # isolated nodes are not written in edgelist assert nodes_equal(list(H), list(G)) assert edges_equal(list(H.edges()), list(G.edges())) os.close(fd) os.unlink(fname) def test_edgelist_integers(self): G = nx.convert_node_labels_to_integers(self.G) (fd, fname) = tempfile.mkstemp() nx.write_edgelist(G, fname) H = nx.read_edgelist(fname, nodetype=int) # isolated nodes are not written in edgelist G.remove_nodes_from(list(nx.isolates(G))) assert nodes_equal(list(H), list(G)) assert edges_equal(list(H.edges()), list(G.edges())) os.close(fd) os.unlink(fname) def test_edgelist_multigraph(self): G = self.XG (fd, fname) = tempfile.mkstemp() nx.write_edgelist(G, fname) H = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiGraph()) H2 = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiGraph()) assert H is not H2 # they should be different graphs assert nodes_equal(list(H), list(G)) assert edges_equal(list(H.edges()), list(G.edges())) os.close(fd) os.unlink(fname) def test_edgelist_multidigraph(self): G = self.XDG (fd, fname) = tempfile.mkstemp() nx.write_edgelist(G, fname) H = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiDiGraph()) H2 = nx.read_edgelist(fname, nodetype=int, create_using=nx.MultiDiGraph()) assert H is not H2 # they should be different graphs assert nodes_equal(list(H), list(G)) assert edges_equal(list(H.edges()), list(G.edges())) os.close(fd) os.unlink(fname)