* Fixes #3955 (boundary_expansion docs) * add to docs for steiner_tree * Add missing functions to docs. Thanks to #4111 * Doc fixups * Put filters onto the doc pages. * Add @jamestrimble doc compare script to repo and expand * Fix latex syntax in docs for trophic * more latex corrections * deprecate edge_betweeness and betweeness_centrality_source. warnings and add to list of deprecations * Use docs to identify hopcrfot_karo_matching and maximum_matching * remove underscore from _naive_greedy_modularity_communities * cite James Trimble for code that finds missing functions * Update parallel_betweenness example to avoid deprecated function betweenness_centrality_source should be replaced by betweenness_centrality_subset in plot_parallel_betweenness. find _naive_greedy and change name * tweak
* Initial commit. * Fixed PEP 8 issues. * Fixed more PEP 8 issues. * Added type to sepset-nodes. * Moved file to networkx/algorithms/tree, changed name of module to avoid namespace collision, added entry to doc system, changed deepcopy to list, removed check for None, shifted to G.is_directed(), added example. * Removed example code. * Removed unused import statement. * Moved notes section. * Fixed PEP 8 issues and removed old file. * Fixed PEP 8 issues. * Formatting with Black, added docstring to example and removed license information. * Added name to name of contributors. * Ran black i.e., black networkx/algorithms/tree/tests/test_junction_tree_algorithm.py * Updated explanation of junction trees, removed 'Graph' from unsupported classes. * DOC: tweaks to docstring. * Changed naming and updated docstring/code according to suggestions. * Removed old files. * Updated doc and init. * Minor tweaks in docs and import structure * Improve example Co-authored-by: Jarrod Millman <jarrod.millman@gmail.com> Co-authored-by: Ross Barnowski <rossbar@berkeley.edu> Co-authored-by: Dan Schult <dschult@colgate.edu>
merge #3146 which came from unknown repository closes #3146
* add code for tree isomorphism, with tests * fix typo in comment * one more typo in comments * fix some PEP8 formatting, that flake8 didn't care about * rename files as tree_isomorphism * run code through black formatter * incorporate feedback from dschult in PR4067 * fix missing import for not_implemented_for decorator * swap edge order randomly in testing routine positive_single_tree * run black on test_tree_isomorphism.py * spacing tweak to allow CI test of docs Co-authored-by: Dan Schult <dschult@colgate.edu>
* DOC: rm windows-specific note/instructions. Assume user knows how to install scientific Python software on their chosen platform. * DOC: rely on intersphinx for hashable def * Removes the hashable term from the nx glossary and instead refer to the Python glossary via intersphinx. * Wording was from the Python2 docs and had become out-of-sync with the Python glossary entry * DOC: minor fixup to glossary * DOC: Add node attr example and links. * Add a few links to glossary terms and forward-refs to the tutorial section on attributes. * Add an example of add_nodes_from with attribute dicts. * Minor rewordings. * DOC: Add a few more section headings. * Adds three new section headings to the tutorial to better match the natural organization of the material. * Adds additional sentence contextualizing constructors. * DOC: add link to nbunch glossary entry * DOC: Wording change. * DOC: change property links from meth to attr roles. Prevents the () from being added to properties in the rendered docs * DOC: beef up indexing example. Add edge attribute so that the result is clearer than returning an empty dictionary * STY: code style fixup in nbplot * DOC: More precise wording in comment * DOC: switch to autosummary for graph creation. Adds autosummary-generated table for graph creation methods to tutorial. Nice because the methods are linkable, but may be overkill * DOC: Remove pylab suggestion. Use of --pylab is discouraged, so remove the suggestion from tutorial
Also, minor changes to max_weight_clique docstring such as fixing syntax for italics and references; added James Trimble to list of contributors.
* Began writing function for specified path cost and associated tests * Cleaned up formatting and finished writing test * Made minor changes as suggested in PR comment. Name changes and syntax changes * polished up and wrote tests for is_path, adjusted tests to include Digraph and MultiDiGraph, added sphinx shorthand in docs * Fixed most pep8 warnings (excluding line too long) * Updated docstring and fixed is_path to have lower memory footprint * minor tweaks to allow rebase * Add credits for contributor * Run black Co-authored-by: DNiquette16 <Dniquette16@gmail.com> Co-authored-by: Dan Schult <dschult@colgate.edu> Co-authored-by: Jarrod Millman <jarrod.millman@gmail.com>
* added new Link Prediction algorithm (CCPA) * Fixed all the document typo * Fixed the typo and added description to CCPA * Added doc reference and updated contributors list Co-authored-by: Shashi Tripathi <shishu@Shashis-MacBook-Air.local>