This adds tests that try canceling an indexer operation from
within the progress callback.

After writing the tests, I wanted to run this under valgrind and
had a number of errors in that situation because mmap wasn't
working.  I added a CMake option to force emulation of mmap and
consolidated the Amiga-specific code into that new place (so we
don't actually need separate Amiga code now, just have to turn on
-DNO_MMAP).

Additionally, I made the indexer code propagate error codes more
reliably than it used to.

This cleans up some additional issues.  The main change is that
on a filesystem that doesn't support mode bits, libgit2 will now
create new blobs with GIT_FILEMODE_BLOB always instead of being
at the mercy to the filesystem driver to report executable or not.
This means that if "core.filemode" lies and claims that filemode
is not supported, then we will ignore the executable bit from the
filesystem.  Previously we would have allowed it.

This adds an option to the new git_repository_reset_filesystem to
recurse through submodules if desired.  There may be other types
of APIs that would like a "recurse submodules" option, but this
one is particularly useful.

This also has a number of cleanups, etc., for related things
including trying to give better error messages when problems come
up from the filesystem.  For example, the FAT filesystem driver on
MacOS appears to return errno EINVAL if you attempt to write a
filename with invalid UTF-8 in it.  We try to capture that with a
better error message now.

Configurable template dir for Win32

This contains a few bug fixes and some header and API cleanups.

The main API change is that filters should now use GIT_PASSTHROUGH
to indicate that they wish to skip processing a file instead of
GIT_ENOTFOUND.

The bug fixes include a possible out-of-range buffer access in
the ident filter, a filter ordering problem I introduced into the
custom filter tests on Windows, and a filter buf NUL termination
issue that was coming up on Linux.

Increasingly there are a number of components that want to do some
cleanup at global shutdown time (at least if there are not going
to be memory leaks).  This creates a very simple system of shutdown
hooks that will be invoked by git_threads_shutdown.  Right now, the
maximum number of hooks is hardcoded, but since adding a hook is
not a public API, it should be fine and I thought it was better to
start off with really simple code.

Demand read only access to registry key instead of full access.
This might happen in Windows Vista and later.