This change adds all the necessary locking to the odb to avoid races in
the backends.

Part of: #5592

Instead of using a signed type (`off_t`) use a new `git_object_size_t`
for the sizes of objects.

Use the new object_type enumeration names within the codebase.

Return an error to the caller when we can't create an object header for
some reason (printf failure) instead of simply asserting.

Next to including several files, our "common.h" header also declares
various macros which are then used throughout the project. As such, we
have to make sure to always include this file first in all
implementation files. Otherwise, we might encounter problems or even
silent behavioural differences due to macros or defines not being
defined as they should be. So in fact, our header and implementation
files should make sure to always include "common.h" first.

This commit does so by establishing a common include pattern. Header
files inside of "src" will now always include "common.h" as its first
other file, separated by a newline from all the other includes to make
it stand out as special. There are two cases for the implementation
files. If they do have a matching header file, they will always include
this one first, leading to "common.h" being transitively included as
first file. If they do not have a matching header file, they instead
include "common.h" as first file themselves.

This fixes the outlined problems and will become our standard practice
for header and source files inside of the "src/" from now on.

Verifying hashsums of objects we are reading from the ODB may be costly
as we have to perform an additional hashsum calculation on the object.
Especially when reading large objects, the penalty can be as high as
35%, as can be seen when executing the equivalent of `git cat-file` with
and without verification enabled. To mitigate for this, we add a global
option for libgit2 which enables the developer to turn off the
verification, e.g. when he can be reasonably sure that the objects on
disk won't be corrupted.

The upstream git.git project verifies objects when looking them up from
disk. This avoids scenarios where objects have somehow become corrupt on
disk, e.g. due to hardware failures or bit flips. While our mantra is
usually to follow upstream behavior, we do not do so in this case, as we
never check hashes of objects we have just read from disk.

To fix this, we create a new error class `GIT_EMISMATCH` which denotes
that we have looked up an object with a hashsum mismatch. `odb_read_1`
will then, after having read the object from its backend, hash the
object and compare the resulting hash to the expected hash. If hashes do
not match, it will return an error.

This obviously introduces another computation of checksums and could
potentially impact performance. Note though that we usually perform I/O
operations directly before doing this computation, and as such the
actual overhead should be drowned out by I/O. Running our test suite
seems to confirm this guess. On a Linux system with best-of-five
timings, we had 21.592s with the check enabled and 21.590s with the
ckeck disabled. Note though that our test suite mostly contains very
small blobs only. It is expected that repositories with bigger blobs may
notice an increased hit by this check.

In addition to a new test, we also had to change the
odb::backend::nonrefreshing test suite, which now triggers a hashsum
mismatch when looking up the commit "deadbeef...". This is expected, as
the fake backend allocated inside of the test will return an empty
object for the OID "deadbeef...", which will obviously not hash back to
"deadbeef..." again. We can simply adjust the hash to equal the hash of
the empty object here to fix this test.

fsync all the things

Freshen the tree object that a commit points to during commit time.