When the user passes in a diff which has no repository associated
we may call `git_config__get_int_force` with a NULL-pointer
configuration. Even though `git_config__get_int_force` is
designed to swallow errors, it is not intended to be called with
a NULL pointer configuration.

Fix the issue by only calling `git_config__get_int_force` only
when configuration could be retrieved from the repository.

The `normalize_find_opts` function in theory allows for the
incoming diff to have no repository. When the caller does not
pass in diff find options or if the GIT_DIFF_FIND_BY_CONFIG value
is set, though, we try to derive the configuration from the
diff's repository configuration without first verifying that the
repository is actually set to a non-NULL value.

Fix this issue by explicitly checking if the repository is set
and if it is not, fall back to a default value of
GIT_DIFF_FIND_RENAMES.

When stashing the workdir tree, examine the index as well.  Using
a mechanism similar to `git_diff_tree_to_workdir_with_index`
allows us to determine that a file was added in the index and
subsequently modified in the working directory.  Without examining
the index, we would erroneously believe that this file was
untracked and fail to include it in the working directory tree.

Use a slightly modified `git_diff_tree_to_workdir_with_index` in
order to avoid some of the behavior custom to `git diff`.  In
particular, be sure to include the working directory side of a
file when it was deleted in the index.

Drop `git_diff__merge_like_cgit_reversed`, since it's a copy and
paste mess of slightly incompatible changes.

This fixes a bug where if a file was in conflicted state in either diff,
it would not always remain in conflicted state in the merged diff.

git_diff_find_similar() now ignores git_diff_delta records with a status
of GIT_DELTA_CONFLICTED, which fixes a crash due to assert() being hit.

When diffs are generated, the value for the 'nfiles' field of 'git_diff_delta'
will be consistent with the value in the 'status' field. Merging diffs can
modify the 'status' field of some deltas and the 'nfiles' field needs to be
updated accordingly.