This changes the behavior of object parsing for commits and tags
so that even when bad data is found inside the object, we will
continue to try to parse as much of the object as we can.  The
existing functions (`git_object_lookup` for example) will still
delete the partially parsed object before returning an error, but
this also adds a new function `git_object_lookup_lax` that will
still return the error, but will also return the object with the
partial data (if we got far enough along in the parsing process to
even create the base object).

Configuration snapshotting

Accessing the repository's config and immediately taking a snapshot of
it is a common operation, so let's provide a convenience function for
it.

Diff and status do not want core.safecrlf to actually raise an
error regardless of the setting, so this extends the filter API
with an additional options flags parameter and adds a flag so that
filters can be applied with GIT_FILTER_OPT_ALLOW_UNSAFE, indicating
that unsafe filter application should be downgraded from a failure
to a warning.

Reduce excessive OID calculation for diff and stat

commit: safer commit creation with reference update

There were a couple of "init_opts()" functions a few more cases
of structure initialization that I somehow missed.